Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq52 131 1e-25 seq1 129 5e-25 seq116 93.3 4e-14 seq55 86.0 5e-12 >seq52 Length=153599 Score = 131 bits (144), Expect = 1e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || ||||||||||| || || |||||| |||||||||||| || || ||| | Sbjct 49407 CTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 49348 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||||||||||||||| ||||| || |||||||||||||| || || || || | Sbjct 49347 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 49288 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || | ||||||| | || ||||||| ||| | ||| || || ||||| || || || Sbjct 49287 GTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCTGTCAGGGTCTTGAC 49228 Query 118727 AAAAATCTGCAT 118738 ||| |||||||| Sbjct 49227 AAAGATCTGCAT 49216 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || ||||||||||| ||| | ||| || |||||| | ||| || ||||| | Sbjct 49971 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAACTGCTTGCCAGCAAA 49912 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 |||||| ||||||||||| || || || ||||||||||| || || || || | Sbjct 49911 GATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 49852 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| |||||| | ||| ||||| | || | ||| ||||||||||| || || || Sbjct 49851 GTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGCCGGTCAGCGTCTTAAC 49792 Query 118727 AAAAATCTGCATGGCT 118742 |||||||||||| || Sbjct 49791 GAAAATCTGCATGCCT 49776 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| || | |||||| || |||||||| || || || | Sbjct 49688 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCAAA 49629 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || |||||||| ||||| || |||||||||||||| |||||| || || | Sbjct 49628 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATTTTGGCCTTGACATT 49569 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || | |||||||| | ||| ||||||| ||| | || ||||| |||| || || || Sbjct 49568 GTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAACGTCTTGAC 49509 Query 118727 AAAAATCTGCAT 118738 ||||||||||| Sbjct 49508 GAAAATCTGCAT 49497 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||| || || |||||||| || | ||||| ||| || Sbjct 50269 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGACCATCTTCA 50210 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| ||||||| |||||||| ||||| || ||||||||||| || Sbjct 50209 AGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGG 50150 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || | ||| ||||| | || | ||| ||| Sbjct 50149 ATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTCAACCTCCAGAGTGATCGTCTTG 50090 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||||| || || || |||||||||||| || Sbjct 50089 CCGGTCAAGGTCTTGACGAAAATCTGCATGCCT 50057 >seq1 Length=721539 Score = 129 bits (142), Expect = 5e-25 Identities = 156/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 118530 ACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | |||||||| || |||||||||||||| || ||||| |||||| Sbjct 157949 ACCAAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTC 158008 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| | ||||||||||||||||| || || || |||||||| || Sbjct 158009 CAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTG 158068 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||| | ||||||||||| || | || || Sbjct 158069 AATCTTCGCCTTGACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTT 158128 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || || ||||||||| Sbjct 158129 GCCGGTCAATGTCTTAACGAAGATCTGCATG 158159 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || |||||||||||||| | ||||||| ||||| ||||| || ||| Sbjct 157446 GTCGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCGTCCTCCAGCTGCTTGCCA 157505 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||| |||||||| ||||| || |||||||| || ||| || || Sbjct 157506 GCGAAGATAAGACGTTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTCGCCTTC 157565 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | | ||||||||| | || | ||| ||||| |||| || Sbjct 157566 ACGTTGTCGATCGTGTCAGAGGACTCGACCTCCAACGTGATCGTCTTGCCCGTCAACGTC 157625 Query 118722 TTTACAAAAATCTGCATG 118739 ||||| || ||||||||| Sbjct 157626 TTTACGAAGATCTGCATG 157643 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || || ||||| ||| || || || ||||| ||||| || || Sbjct 158190 GTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCGTCCTCCAGCTGCTTGCCG 158249 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||||||||| |||||||| |||||||||||||| ||| || || Sbjct 158250 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTC 158309 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | | |||||||||| || | || ||||| ||||| || Sbjct 158310 ACGTTGTCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTC 158369 Query 118722 TTTACAAAAATCTGCATGGCT 118742 || || || ||||||||| || Sbjct 158370 TTGACGAAGATCTGCATGCCT 158390 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || || || |||||| || ||||| ||||| ||||| || ||| Sbjct 157674 GTAGACTCCTTCTGGATATTATAATCGGACAACGTGCGACCGTCCTCAAGCTGCTTGCCA 157733 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || ||||||||||||||||| || ||||||||||| ||| || || Sbjct 157734 GCGAAGATAAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTC 157793 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | | |||||| |||| || | || || || || ||||| Sbjct 157794 ACGTTGTCGATCGTGTCAGAGGACTCGACTTCGAGCGTGATTGTCTTCCCCGTGAGAGTC 157853 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 157854 TTCACGAAGATCTGCAT 157870 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | ||||||||| || || ||||||||||| || || | ||||| ||||| Sbjct 157211 GTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGACAGCGTCCTGCCGTCCTCAAGCTG 157270 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| |||| || ||||| |||||||| || ||||||||||| || ||| || Sbjct 157271 CTTGCCAGCGAAGATCAGGCGCTGTTGATCGGGGGGAATGCCCTCCTTATCCTGAATCTT 157330 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | ||||| | ||| ||||| | ||| | ||| || || || Sbjct 157331 CGCCTTCACGTTGTCAATCGTGTCGGAAGACTCTACCTCCAGGGTGATCGTCTTTCCAGT 157390 Query 118715 CAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || || ||||||||| || Sbjct 157391 GAGCGTCTTGACGAAGATCTGCATGCCT 157418 >seq116 Length=96108 Score = 93.3 bits (102), Expect = 4e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||||||| ||||| ||||||| Sbjct 9776 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 9835 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGC 118635 ||||| || || ||| ||||||| |||||||| || || || |||| Sbjct 9836 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGC 9881 >seq55 Length=147043 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || || |||||||| ||||| | |||||| ||||| Sbjct 26075 CACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCGTCCTC 26016 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 |||||| || |||||| |||| || |||||||||||||| || || Sbjct 26015 GAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCGGGGGGAAT 25971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826635436704