Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq52 138 1e-27 seq1 125 8e-24 >seq52 Length=153599 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| ||||| ||||| |||| |||||| || | || || |||||||| || Sbjct 49412 GTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCC 49353 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| ||||| ||||||||||||| ||| | || |||||||||| ||| || ||| Sbjct 49352 GCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 49293 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | ||||| |||||||| |||| || || || || || || || || Sbjct 49292 A-CGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCTGTCAGGGT 49234 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| |||||||| ||||| Sbjct 49233 CTTGACAAAGATCTGCAT 49216 Score = 127 bits (140), Expect = 2e-24 Identities = 155/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 42976 CCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTA 43035 ||| ||| | ||||||||||| || || ||||| || | ||||| || |||| || | Sbjct 49704 CCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGA 49645 Query 43036 GCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGA 43095 ||||||| || || || || || ||||||||||||| ||| | || |||||||||| ||| Sbjct 49644 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGA 49586 Query 43096 TTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 |||| | |||| | | | ||||| || ||||| |||| |||||||| ||| Sbjct 49585 ATTTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTG 49526 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| | |||||| || || || ||||| Sbjct 49525 CCCGTCAACGTCTTGACGAAAATCTGCAT 49497 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||||||||||| || || ||||| || | || || || | || || Sbjct 50269 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGACCATCTTCA 50210 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| ||||| ||||||||||||| ||| | || |||||| ||| | Sbjct 50209 AGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGG 50150 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || || |||| ||| | | | || ||| ||| || || || | ||||| || || Sbjct 50149 ATCTTGGCCTTGA-CGTTGTCAATGGTATCGGACGACTCAACCTCCAGAGTGATCGTCTT 50091 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | ||||| || || || ||||| Sbjct 50090 GCCGGTCAAGGTCTTGACGAAAATCTGCAT 50061 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| ||||| ||||| || | ||||| || | || || | |||||| ||| Sbjct 49976 GTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAACTGCTTGCCA 49917 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || ||||| |||||||| || | || | | |||||||||| ||| || ||| Sbjct 49916 GCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 49857 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | ||||| ||| || || || | ||||| || ||||| || |||||| Sbjct 49856 ACATTGTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGCCGGTCAGCGTC 49797 Query 43167 TTTACAAAGATTTGCAT 43183 || || || || ||||| Sbjct 49796 TTAACGAAAATCTGCAT 49780 >seq1 Length=721539 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || | || || || |||| || |||||||| || ||||| Sbjct 158195 CTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCGTCCTCCAGCTGCTTGCCGGCGAA 158254 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | || |||||||||| ||| | || | | ||| Sbjct 158255 GATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGT 158313 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||||| || |||| ||||||||| |||||||| || ||||| | Sbjct 158314 TGTCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTGA 158373 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 158374 CGAAGATCTGCAT 158386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812510823360