Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 131 1e-25 seq52 123 2e-23 >seq1 Length=721539 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | ||| || ||||| || |||||||||||| Sbjct 158160 CCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAC 158219 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| |||| ||||||||| ||||| || || |||||||||||| || Sbjct 158220 AAGGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 158279 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | |||| || | |||||||| Sbjct 158280 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGATTCGACC 158339 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||| ||||| || || || || || ||||||||||| Sbjct 158340 TCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 158386 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | ||| || ||||| || || || |||||| Sbjct 157644 CCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGAC 157703 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | || |||| || | ||||||||| ||||| || || |||||||| ||| || Sbjct 157704 AACGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGGG 157763 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | |||| || | || ||||| Sbjct 157764 ATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACT 157823 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || || || |||||||| ||||| ||||||||||| Sbjct 157824 TCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 157870 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||| || |||||| | | |||| Sbjct 157203 AGAACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGACAGCGTCCTGCCGTCC 157262 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || || ||||| || ||| ||| | || |||||| || Sbjct 157263 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCGGGGGGAATGCCCTCCTTATCC 157322 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | |||| |||| || || || |||| ||||| || Sbjct 157323 TGAATCTTCGCCTTCACGTTGTCAATCGTGTCGGAAGACTCTACCTCCAGGGTGATCGTC 157382 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || ||||||||||| Sbjct 157383 TTTCCAGTGAGCGTCTTGACGAAGATCTGCAT 157414 Score = 102 bits (112), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 34184 AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAAC 34243 ||||| | |||| || ||||| |||||||| || ||||| || | || |||| | Sbjct 157953 AGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCAGC 158012 Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303 |||||||| ||||||||||| |||||||| || ||| | | |||||| || ||| Sbjct 158013 TGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATC 158072 Query 34304 TTTTGCTTTAGATCGGCTATCGAATCGGTC----GATTCGACGTCCACCGTGATGGTTTT 34359 || ||| | || |||||| | ||| || ||||| || | |||||||| || Sbjct 158073 TTCGCCTTGACAT----TATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTT 158128 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| | || || || ||||||||||| Sbjct 158129 GCCGGTCAATGTCTTAACGAAGATCTGCAT 158158 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || || || | ||| ||| ||||| |||||||| || || Sbjct 157416 CCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGAA 157475 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| |||| ||||||||| ||||| || || || ||||| || || Sbjct 157476 AGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGGA 157535 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | | | | |||| || | || ||||| Sbjct 157536 ATACCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACC 157595 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || ||||| || | || || || ||||||||||| Sbjct 157596 TCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTGCAT 157642 >seq52 Length=153599 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| ||||| ||||| | || |||| ||| | || || || ||||| ||||||||||| Sbjct 50291 GAAGCCGCCACGCAGACGAAGGACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTC 50232 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 || ||| || | || || | ||||||||| ||||| ||||| |||||||||||| Sbjct 50231 TGAGAGCGTGCGACCATCTTCAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGG 50172 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | || |||||| || ||||| ||| | | | | || | ||||| ||| || Sbjct 50171 CGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTC 50112 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||| || |||||||| | || || || || |||||||| Sbjct 50111 AACCTCCAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 50061 Score = 114 bits (126), Expect = 8e-21 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34184 AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAAC 34243 ||||| | || || || ||||| |||||||||||||| || |||| | || |||||| Sbjct 49985 AGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAAC 49926 Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303 |||||||| || || ||||| |||||||| || || | | ||||||||| ||| Sbjct 49925 TGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATC 49866 Query 34304 TTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCG 34363 || ||| | || | | || | || | ||| || || |||| ||||| || |||||| Sbjct 49865 TTGGCCTTGACATTGTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGCCG 49806 Query 34364 GTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || || |||||||| Sbjct 49805 GTCAGCGTCTTAACGAAAATCTGCAT 49780 Score = 111 bits (122), Expect = 1e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 34180 CACC-AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGT 34238 |||| ||||| | || || || ||||| ||||||||||| ||||| ||| | || | Sbjct 49426 CACCGAGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCT 49367 Query 34239 CCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGG 34298 | | ||||||||| ||||| ||||| |||||||||||| || | || ||||||||| Sbjct 49366 CGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCT 49307 Query 34299 CTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTT 34358 ||||| ||| | | | |||| | || | ||||| || || | || || || | Sbjct 49306 GGATCTTGGCCTTGACGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCT 49247 Query 34359 TGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || || || || |||||||||||||| Sbjct 49246 TCCCTGTCAGGGTCTTGACAAAGATCTGCAT 49216 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 34182 CCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCA 34241 |||| || | || || || ||||| ||||||||||| || || ||| |||| || | Sbjct 49704 CCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGA 49645 Query 34242 ACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTA 34301 ||||||||| || || || || |||||||||||| || | || ||||||||| || Sbjct 49644 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC--CTG 49587 Query 34302 TCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 ||||| ||| | || | | || | || | || || || || | |||||||| || Sbjct 49586 AATTTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTT 49527 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || | || || || || |||||||| Sbjct 49526 GCCCGTCAACGTCTTGACGAAAATCTGCAT 49497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069196542720