Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq52 116 3e-21 seq1 104 2e-17 >seq52 Length=153599 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || |||||||||||||||||||||||||| ||| ||| | || || || || Sbjct 49419 GTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGCTG 49360 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| |||||||| || | |||||||||||| || || Sbjct 49359 CTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 49300 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | ||||| |||||||| | |||||||||||| || || Sbjct 49299 GGCCTTGACGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCTGT 49240 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||| |||||||| ||||| Sbjct 49239 CAGGGTCTTGACAAAGATCTGCAT 49216 Score = 116 bits (128), Expect = 3e-21 Identities = 153/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 |||| || || || |||||||||||||| ||||||||||| || ||| |||| | Sbjct 49707 TACCCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTT 49648 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | || || || || || || |||| ||||| |||||||| || | |||||||||||| Sbjct 49647 CGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCT 49588 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 |||||| ||| || | | | ||||| ||||||||| | ||| || |||| Sbjct 49587 GAATTTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCT 49528 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||||| ||||| || || || ||||| Sbjct 49527 TGCCCGTCAACGTCTTGACGAAAATCTGCAT 49497 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || |||||||||||||| ||||||||||| || |||| | || || Sbjct 50269 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGACCATCTTCA 50210 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| |||||||| || | |||||||| ||| Sbjct 50209 AGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGG 50150 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || ||| ||||||| || ||||||||| Sbjct 50149 ATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTCAACCTCCAGAGTGATCGTCTTG 50090 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||| || || || |||||| Sbjct 50089 CCGGTCAAGGTCTTGACGAAAATCTGCATG 50060 >seq1 Length=721539 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||||||||| || ||||||||| || ||| |||| ||||| || Sbjct 158183 GTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCGTCCTCCAGCTG 158242 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| ||||||||||| | |||||||||||| ||| || Sbjct 158243 CTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTT 158302 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| || ||||| | || || ||||||||||| Sbjct 158303 CGCCTTCACGTTGTCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGT 158362 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| ||||| || ||||| |||||| Sbjct 158363 CAGGGTCTTGACGAAGATCTGCATG 158387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| ||||| || |||||||||||||||||| || |||| |||| | || | Sbjct 157948 TACCAAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCT 158007 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 |||| || || || ||||| || | ||||| || || || || | ||||||||| ||| Sbjct 158008 CCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCT 158067 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| || ||| || | | |||| ||| ||||| | || || |||| Sbjct 158068 GAATCTTCGCCTTGACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCT 158127 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| |||| ||||| || ||||| |||||| Sbjct 158128 TGCCGGTCAATGTCTTAACGAAGATCTGCATG 158159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071771734952