Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq70 123 3e-23 seq37 86.0 8e-12 >seq70 Length=136885 Score = 123 bits (136), Expect = 3e-23 Identities = 365/560 (65%), Gaps = 12/560 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||||| |||||| || | || || | ||||| || ||||| || Sbjct 75833 CACGCGAAGTCGGTGTGCATACCCTCATCACGGCTGATGAGCTCGTTCGAGAACGTCAGG 75774 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || || ||||| || ||||| || || || ||||| || || || |||||| Sbjct 75773 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGACGCGAACGAGCCAGAGAAGAAG 75714 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT--- 33758 || || || || || || ||||||||||| | ||| | | || | | || ||| Sbjct 75713 ATACCCTCGACCGCTGCGAAGGCAATAAGACGCTCGGC--GAACGAGGATTTCTTGTCCG 75656 Query 33759 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| | ||||| || |||||||| || | || || || || || || || | Sbjct 75655 AGATCCAACGGAGGGCCCAGTCCGCCTTCTTCTTGATGCAGGGGATGGTGTCGATCGCGT 75596 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 ||| || | | | | || || | ||| || ||||| | || ||| Sbjct 75595 CAAACAGGTGCTCACGCTGCGTGGGGTCCTTGATATAGGTGTCGATGAGGAGCGAGTACG 75536 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | || || || ||||| || || ||||| || |||||||| || | ||||| | || Sbjct 75535 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACCGTGCCTCAGCAA 75476 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 ||| ||||| | | || || || | | ||| ||||| || || || || || | Sbjct 75475 CCTGTACTTCGTTGGAGAACCGCTCGACGAGATTCTCATTGACAATGCCGTCGGACGCAG 75416 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTC 34052 | ||||| || | || || || || | ||||| | ||| | || | | Sbjct 75415 CGAAAAAGGCGAGGACGTGCGAGATGAAGTGGCGCTCGTC-GTCGTTCAGACGGTTGTGC 75357 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 || |||| | || || |||| |||| || || | ||||| || || ||||| ||| Sbjct 75356 CAGTCATGCAGGTCCTTGGATAGGTCCATCTCCTCTGCGGTCCAGAACGACGCCTCAGCC 75297 Query 34113 TTTTTATACATATTCCAGAT 34132 || || ||||| | |||||| Sbjct 75296 TTCTTGTACATCTGCCAGAT 75277 >seq37 Length=175141 Score = 86.0 bits (94), Expect = 8e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 63279 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCC 63337 ||||| || |||||||| | ||| ||| || ||||| | | | ||||| || || Sbjct 162050 AAGAGGTCCGGAATCCACAAAGC-ATAGAAGAGATCACGAGCACGGACCTCCTCCTTACC 162108 Query 63338 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63397 |||||| | || |||| |||| | | | ||| | |||||||||||| | ||| || Sbjct 162109 ATGGTTCTTTCTCAGGTCGATGAACTCGAAGACATCGGCATGCCACGGTTCGATGTAGAT 162168 Query 63398 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63448 ||| | | ||||||| || ||||| || |||||||| | ||||| ||| || Sbjct 162169 GGCAAAAGCTCCAGGGCGCTTGTTGCCACCCTGATCGACGTATCGAGCAGT 162219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811994623360