Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq52 107 2e-18 >seq1 Length=721539 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | |||| || || || || |||||||| ||||| Sbjct 157415 GCCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGA 157474 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| | ||| || ||||| || ||||| |||| |||||||||||||| ||||| Sbjct 157475 AAGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGG 157534 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || || || ||| | || | || | | || | ||||| | || ||| | Sbjct 157535 AATACCCTCCTTATC-CTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGA 157593 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||||||| |||||||| |||||||| || ||||| Sbjct 157594 CCTCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTGCAT 157642 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || |||||||| ||||| || ||||| || || ||||| || ||| Sbjct 157962 GTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCAGCTGCTTGCCA 158021 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | || ||||| |||||||| || || || || || || || ||| | || | || Sbjct 158022 GCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCC-TGAATCTTCGCCTT 158080 Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | |||||| | | ||| ||||| | || | |||||||||||||| || Sbjct 158081 GACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGCCGGTCAATGT 158140 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 158141 CTTAACGAAGATCTGCAT 158158 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | |||||||| || || || ||||||||| Sbjct 157643 GCCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGA 157702 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| || ||||| || ||||| |||| || || |||||||||||||| Sbjct 157703 CAACGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGG 157762 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| | || | || | | || | ||||| | || ||| | Sbjct 157763 GATACCCTCCTTGTC-CTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGA 157821 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | ||||| || || | || || ||||| || |||||| Sbjct 157822 CTTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCATA 157871 >seq52 Length=153599 Score = 107 bits (118), Expect = 2e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||||||||| || || ||| ||||||| || ||||| ||||| || ||||| || || Sbjct 49652 GTCTTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 49593 Query 139669 GTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| |||| | || | | || | ||||| | || ||||||||| | ||| | Sbjct 49592 GTC-CTGAATTTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGA 49534 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| |||||||| || ||||| || |||||| Sbjct 49533 TGGTCTTGCCCGTCAACGTCTTGACGAAAATCTGCATA 49496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496059585030400