Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq70 138 2e-27 seq37 86.0 8e-12 >seq70 Length=136885 Score = 138 bits (152), Expect = 2e-27 Identities = 369/560 (66%), Gaps = 12/560 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| ||||| ||||||||| | || || | ||||| || ||||| || Sbjct 75833 CACGCGAAGTCGGTGTGCATACCCTCATCACGGCTGATGAGCTCGTTCGAGAACGTCAGG 75774 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || || ||||| || ||||| || || ||||| || || ||||| |||||| Sbjct 75773 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGACGCGAACGAGCCAGAGAAGAAG 75714 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT--- 42241 || || || || || || ||||||||||| | ||| | ||| | | | || ||| Sbjct 75713 ATACCCTCGACCGCTGCGAAGGCAATAAGACGCTCGGC-GAACGAGGA-TTTCTTGTCCG 75656 Query 42242 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| | ||||| || |||||||| || | || || || || || || || | Sbjct 75655 AGATCCAACGGAGGGCCCAGTCCGCCTTCTTCTTGATGCAGGGGATGGTGTCGATCGCGT 75596 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||| || | | | | || || | ||| || ||||| | || ||| Sbjct 75595 CAAACAGGTGCTCACGCTGCGTGGGGTCCTTGATATAGGTGTCGATGAGGAGCGAGTACG 75536 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || || || ||||| || || ||||| || |||||||| || | ||||| | || Sbjct 75535 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACCGTGCCTCAGCAA 75476 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 |||||||||| | | || || || | | ||| || || || || ||||| || | Sbjct 75475 CCTGTACTTCGTTGGAGAACCGCTCGACGAGATTCTCATTGACAATGCCGTCGGACGCAG 75416 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTC 42535 | ||||| || | || || || || | |||| || ||| | || | | Sbjct 75415 CGAAAAAGGCGAGGACGTGCGAGATGAAGTGGCGCTCGT-CGTCGTTCAGACGGTTGTGC 75357 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || |||| | || || |||| || | || ||| | ||||| || || || || ||| Sbjct 75356 CAGTCATGCAGGTCCTTGGATAGGTCCATCTCCTCTGCGGTCCAGAACGACGCCTCAGCC 75297 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 75296 TTCTTGTACATCTGCCAGAT 75277 >seq37 Length=175141 Score = 86.0 bits (94), Expect = 8e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 72034 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 ||||| || |||||||| | ||| ||| || ||||| | | | |||||| || || Sbjct 162050 AAGAGGTCCGGAATCCACAAAGC-ATAGAAGAGATCACGAGCACGGACCTCCTCCTTACC 162108 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 |||||| | || |||| |||| | | | ||| | |||||||||||| | ||| || Sbjct 162109 ATGGTTCTTTCTCAGGTCGATGAACTCGAAGACATCGGCATGCCACGGTTCGATGTAGAT 162168 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 72203 ||| | | |||| || || ||||| || |||||||| | ||||| ||| || Sbjct 162169 GGCAAAAGCTCCAGGGCGCTTGTTGCCACCCTGATCGACGTATCGAGCAGT 162219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133226861120