Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 132 1e-25 >seq1 Length=721539 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | |||||| || ||||| || || || || || || || || ||||| Sbjct 157202 AAGAACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGACAGCGTCCTGCCGTC 157261 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||||||||| || || || || || ||||| Sbjct 157262 CTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCGGGGGGAATGCCCTCCTTATC 157321 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || || || || | || ||| || |||||||| || || || || Sbjct 157322 CTGAATCTTCGCCTTCACGTTGTCAATCGTGTCGGAAGACTCTACCTCCAGGGTGATCGT 157381 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || || |||||||| Sbjct 157382 CTTTCCAGTGAGCGTCTTGACGAAGATCTGCAT 157414 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || || || || || || | ||| || || || || || ||| Sbjct 157962 GTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCAGCTGCTTGCCA 158021 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| |||||||| || || || || |||||||||||||| || || Sbjct 158022 GCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCGCCTTG 158081 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || | || ||||| ||||| || ||||| || || | ||| Sbjct 158082 ACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGCCGGTCAATGTC 158141 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 158142 TTAACGAAGATCTGCAT 158158 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||| |||||||| || || ||||| ||||| | ||||| Sbjct 157431 AGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCGTCC 157490 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | || ||||||||||| || || || |||||| Sbjct 157491 TCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGGAATACCCTCCTTATCC 157550 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | || || | || ||||| | || || ||| Sbjct 157551 TGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACCTCCAACGTGATCGTC 157610 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || ||||| || |||||||| Sbjct 157611 TTGCCCGTCAACGTCTTTACGAAGATCTGCAT 157642 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || ||||| |||||||| || || | || | |||||| Sbjct 157658 AAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGACAACGTGCGACCGTC 157717 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| ||||| ||||| || || || || || Sbjct 157718 CTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTC 157777 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || || || || | || || | || || || || || || || Sbjct 157778 CTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACTTCGAGCGTGATTGT 157837 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || || || |||||||| Sbjct 157838 CTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 157870 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || ||||| ||||| ||||| || | || | |||||| Sbjct 158174 AAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCGTC 158233 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || || ||||| || || || || || Sbjct 158234 CTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 158293 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || || || || | || || | ||| ||||| || || || || Sbjct 158294 CTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGT 158353 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || || || |||||||| Sbjct 158354 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 158386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151387896368096