Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 >seq1 Length=721539 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||||| ||||| ||||| || | ||||||||| || ||| ||||| ||||| Sbjct 157667 GTGCAGGGTAGACTCCTTCTGGATATTATAATCGGACAACGTGCGACCGTCCTCAAGCTG 157726 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || | ||||| | | |||||||| ||||| ||||| || ||||| | ||| || Sbjct 157727 CTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGAATCTT 157786 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||| ||| | ||| ||||||| | ||||| || | |||||| || || || || Sbjct 157787 CGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACTTCGAGCGTGATTGTCTTCCCCGT 157846 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| ||||||||||| Sbjct 157847 GAGAGTCTTCACGAAGATCTGCAT 157870 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || |||| || | || | ||| |||||||| || | ||| ||||| Sbjct 157416 CCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGAA 157475 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||||||||||| || || | ||||| | | ||||||||| |||||| Sbjct 157476 AGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGGA 157535 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || || || | ||| || ||||| ||| | ||| ||||||| | ||||| Sbjct 157536 ATACCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACC 157595 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||| || || || || | || || || ||||||||||||| Sbjct 157596 TCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTGCATGC 157644 Score = 109 bits (120), Expect = 5e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGC 94861 ||||| ||||| ||||| || | || || ||| || || || || ||||||||| Sbjct 158183 GTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGACA-AG-GTACGACCGTCCTCCAGC 158240 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| | ||||| | | ||||| || |||||||| || || ||||| | ||| Sbjct 158241 TGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATC 158300 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || ||||| ||| | ||| ||||||| | ||||| || | ||||||||| || || Sbjct 158301 TTCGCCTTCACGTTGTCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTCTTGCCC 158360 Query 94982 GTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || ||||||||||||| Sbjct 158361 GTCAGGGTCTTGACGAAGATCTGCATGC 158388 Score = 102 bits (112), Expect = 7e-17 Identities = 153/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 94799 ACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 |||||| |||| |||||| ||||| || | ||| ||||| | | ||||| || |||| Sbjct 157949 ACCAAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATC--TGACAGTGTGCGACCATCC 158006 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||| || || | || || | | |||||||| || || ||||| || || || Sbjct 158007 TCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCC 158066 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| || |||||||| ||| ||||||| ||||| || | |||||||| Sbjct 158067 TGAATCTTCGCCTTGACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTC 158126 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || | || || || ||||||||||||| Sbjct 158127 TTGCCGGTCAATGTCTTAACGAAGATCTGCATGC 158160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448287210208320