Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq37 138 3e-27 seq70 116 1e-20 >seq37 Length=175141 Score = 138 bits (152), Expect = 3e-27 Identities = 250/366 (68%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 364194 CAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTAT 364253 |||||||||||||||| |||| ||||| || || | |||||| || || ||||| || Sbjct 161721 CAAGTCCAACCAGCAGAACCTGGGTACTATCAAGTCGTCCAACCTCTGCACGGAGATCAT 161662 Query 364254 TGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGC 364313 ||| ||| | || || || ||||| |||||||| || || |||||||| || || || | Sbjct 161661 TGAGTACTCGGCGCCGGATGAGACCGCCGTATGCAATCTCGCGTCGATTGCCCTCCCCTC 161602 Query 364314 GTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTAC 364373 || | | | || | | || ||||| ||| | ||||| || | | | | Sbjct 161601 TTTCATCGAGAACGGCAAGTACAACTTCCAGCGTCTCCACGACGTCACGAAGGTCGTTGC 161542 Query 364374 TTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTC 364433 | ||| ||| || | || ||| || || ||||| || || || ||| || || Sbjct 161541 CTTCAACCTCAACCGCATCATTGACGTCAACTACTATCCCATCCCCGAGGCCCGCCGCTC 161482 Query 364434 TAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGAT 364493 || ||||||||||| ||||| ||| | ||||| ||||| || || ||| || ||| Sbjct 161481 GAACATGCGTCATCGGCCGATCGGTGTCGGTGTGCAGGGTCTTGCCGACACCTTCATGGC 161422 Query 364494 GCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAAC 364553 || ||| | || || |||||||| || || | || || ||| ||||||| ||||| Sbjct 161421 TCTGCGCATGCCCTTCGAGTCGCCTGAGGCACGCGAGCTCAACAAGCAGATCTTCGAAAC 161362 Query 364554 AATGTA 364559 || || Sbjct 161361 GATCTA 161356 >seq70 Length=136885 Score = 116 bits (128), Expect = 1e-20 Identities = 161/223 (72%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCA--TTCG 22486 || ||||| ||||| || ||||||||| ||||| | |||| || || | || Sbjct 73419 ATCAAGAAGAAGGCGGACTGGGCGCTGCGCTGGATCGCGGACAA--AAAGTCGACGTTTA 73362 Query 22487 CGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG 22546 |||| || ||| |||| || || | ||| |||||||||||||| || || | || Sbjct 73361 CGGAGCGGCTTGTTGCGTTCGCCGCGGTCGAAGGCATTTTCTTCTCCGGCTCGTTCGCGT 73302 Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAA 22606 | ||||| ||||| || || |||| ||||||| || || ||||| || || ||| | | Sbjct 73301 CGATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGCCTGACGTTCTCGAACGAGCTCA 73242 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649 | ||||| ||||||||| | || ||||| ||||| ||| |||| Sbjct 73241 TCAGCCGCGATGAGGGTATGCACACCGACTTTGCATGTCTGCT 73199 Score = 107 bits (118), Expect = 5e-18 Identities = 170/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 22410 CGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT--- 22466 |||||| |||||| | | || ||||| ||||| || ||||| || ||||| Sbjct 75597 CGCGATCGACACCATCCCCTGCATCAAGAAGAAGGCGGACTGGGCCCTCCGTTGGATCTC 75656 Query 22467 GAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTT 22526 | |||| || || ||||| || ||||||||||| || || | ||| || || || || Sbjct 75657 GGACAAGAAATCCTCGTTCGCCGAGCGTCTTATTGCCTTCGCAGCGGTCGAGGGTATCTT 75716 Query 22527 CTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCT 22586 ||| ||||| | || | ||||| ||||| || || || | | ||||| || || Sbjct 75717 CTTCTCTGGCTCGTTCGCGTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCT 75776 Query 22587 AACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTAT 22646 ||||| || || ||| | || ||||| ||||||||| | || ||||| || ||||| | Sbjct 75777 GACGTTCTCGAACGAGCTCATCAGCCGTGATGAGGGTATGCACACCGACTTCGCGTGCCT 75836 Query 22647 GCT 22649 ||| Sbjct 75837 GCT 75839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303341710156784