Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq52 107 2e-18 seq116 95.1 1e-14 seq70 91.5 1e-13 seq55 86.0 6e-12 >seq1 Length=721539 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||||| || | ||| | ||||| ||||| |||||||||||||| Sbjct 157415 GCCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGA 157474 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | ||| ||||| || ||||| Sbjct 157475 AAGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGG 157534 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || || ||| ||| | | || | || || | |||||||| Sbjct 157535 AATACCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGAC 157594 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || || || | || |||||||| ||||||||| Sbjct 157595 CTCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTGCATG 157643 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | || | ||| |||||||| || || ||||| ||| Sbjct 158159 GCCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGA 158218 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || |||||| ||||||||||| ||| |||| | |||||||||||| ||||| Sbjct 158219 CAAGGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 158278 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || ||| ||| | | || | || || | ||| |||| Sbjct 158279 AATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGATTCGAC 158338 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| || | ||| || || || || || || ||||| ||||||||| || Sbjct 158339 CTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGCCT 158390 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | || | ||| |||||||| || || || |||||| Sbjct 157643 GCCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGA 157702 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | |||||||| || ||||| Sbjct 157703 CAACGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGG 157762 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || ||| ||| | | || | || || | |||||||| Sbjct 157763 GATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGAC 157822 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || ||||| || ||||| |||||||| Sbjct 157823 TTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 157870 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| |||||||||||||| || ||||| ||||| ||||||||||| Sbjct 157962 GTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCAGCTGCTTGCCA 158021 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | ||||||||| || || ||||| || || || || || ||| |||| Sbjct 158022 GCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCGCCTTG 158081 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | ||||||| |||| || | ||| || ||||| | || Sbjct 158082 ACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGCCGGTCAATGTC 158141 Query 131218 TTTACGAAAATCTGCATG 131235 || ||||| ||||||||| Sbjct 158142 TTAACGAAGATCTGCATG 158159 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | || |||||||| || ||||||||||| Sbjct 157187 GCCACCACGGAGACGAAGAACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGA 157246 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || | |||||| ||||||||||| ||| |||| | ||||| || || || || Sbjct 157247 CAGCGTCCTGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCGGGGGG 157306 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || || ||| ||| | | || | || |||| ||||| | Sbjct 157307 AATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATCGTGTCGGAAGACTCTAC 157366 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | || || || || || || || ||||| ||||||||| || Sbjct 157367 CTCCAGGGTGATCGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCATGCCT 157418 >seq52 Length=153599 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| ||||||||||| || || ||||| ||||| ||||||||||| ||| | Sbjct 49407 CTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 49348 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| | |||||||||||| || ||||| || || ||||| ||| || ||||| | Sbjct 49347 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 49288 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||| || | ||| || | |||| ||||| || || || || || || || || Sbjct 49287 GTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCTGTCAGGGTCTTGAC 49228 Query 131223 GAAAATCTGCAT 131234 || |||||||| Sbjct 49227 AAAGATCTGCAT 49216 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| || |||| ||| || || || || | ||| |||||| || |||||||| || Sbjct 50289 AGCCGCCACGCAGACGAAGGACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTG 50230 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || ||||||||||| ||| |||| | ||||||||||| || | Sbjct 50229 AGAGCGTGCGACCATCTTCAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCG 50170 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || || || ||| || ||||| | || | ||||||| ||||| | Sbjct 50169 GGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTCAA 50110 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | || || ||||| | || || ||||||||||||||| || Sbjct 50109 CCTCCAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCATGCCT 50057 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| || |||||||| || | ||||| ||| || ||||||||||| || | Sbjct 49688 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCAAA 49629 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| | ||||||||||| || ||||| || || ||||| ||||| ||||| | Sbjct 49628 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATTTTGGCCTTGACATT 49569 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | || || | |||||| | |||| ||| | ||| || || || | || || || Sbjct 49568 GTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAACGTCTTGAC 49509 Query 131223 GAAAATCTGCAT 131234 |||||||||||| Sbjct 49508 GAAAATCTGCAT 49497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| ||||||||||| ||| | || || ||||| | ||||||||| || | Sbjct 49971 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAACTGCTTGCCAGCAAA 49912 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| | |||||||| ||||| ||||| || || ||||| ||| || ||||| | Sbjct 49911 GATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 49852 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | || || | ||||| | || | || | || || ||||| || || || || Sbjct 49851 GTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGCCGGTCAGCGTCTTAAC 49792 Query 131223 GAAAATCTGCATGACT 131238 ||||||||||||| || Sbjct 49791 GAAAATCTGCATGCCT 49776 >seq116 Length=96108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| ||||||| |||||| ||||| ||||||||||| Sbjct 9788 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 9847 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 ||| |||| | |||||||||||||| ||||| Sbjct 9848 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGAT 9879 >seq70 Length=136885 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 46408 GCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAGTTT 46467 |||||||||| ||| || | ||||||||||| | | |||||| | ||||||||||| Sbjct 73051 GCACTGCCCGTTGCACTCATCGGCATGAACGCCCCGCTGATGTGCCAGTACATCGAGTTC 72992 Query 46468 GTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGCGCAATCCA 46527 || |||||||| || || || ||| | ||||| | |||| || ||| Sbjct 72991 GTCGCGGACCGCCTCCTGGTCTCGCTCGGGAACGAAAAGCACTACAACGCCACGAACCCA 72932 Query 46528 TTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTC 46587 || || || ||| || || || ||| ||||||| || ||||| ||||| ||||||||| Sbjct 72931 TTCGACTTCATGGACCTGATTTCACTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGTC 72872 Query 46588 GGCGAGTA 46595 ||| || Sbjct 72871 TCCGATTA 72864 >seq55 Length=147043 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| | || | ||| |||||||| || |||||||| ||||| Sbjct 26092 CCACCACGAAGGCGGAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 26033 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||| || || || Sbjct 26032 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCGGGGGGA 25973 Query 131128 AT 131129 || Sbjct 25972 AT 25971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008599086080