Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq316 120 2e-22 seq52 91.5 1e-13 seq1 82.4 5e-11 >seq316 Length=25981 Score = 120 bits (132), Expect = 2e-22 Identities = 179/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| |||| || ||||||||||| || || || || || |||||| | || || || Sbjct 20587 AAGATCGAAGGAAAGGGAAACGGCATCAAGACTGTTGTTCCTAACATGTCCGATGTAGCC 20528 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 |||| | | | || |||||||||| || || | ||||| ||||| || ||||| Sbjct 20527 CGGGCGTTGAGCAGGCCGCCCACCTACCCCACCAAGTTCTTCGGATGCGAGCTCGGCGCC 20468 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 |||||| ||| ||| | || ||||| || | |||||| ||||| |||| || | || Sbjct 20467 CAGACGTCGTTCGATGAGAAGAACGACCGGTACATCGTGAACGGCGCGCACGACGCGGCG 20408 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 ||||||| || | ||||||| || || ||||| || ||||| || ||| | Sbjct 20407 AAGCTGCGTGAGCTGCTTGACGTGTTCATCGAGAAGTTCGTACTGTGCAAGGCGTGCAAG 20348 Query 6474 AACCCGGAGACCGA 6487 ||||||||||| || Sbjct 20347 AACCCGGAGACGGA 20334 >seq52 Length=153599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 38110 CCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTA 38169 ||| |||||| ||||||||||| || || ||||| || || | | || |||| || | Sbjct 49704 CCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGA 49645 Query 38170 ATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAA 38229 || || || ||||| || ||||| || || |||| |||| ||| || |||||| || Sbjct 49644 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAA 49585 Query 38230 TTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTAC 38289 |||| ||| ||||| | | || || || || || | || || || || | Sbjct 49584 TTTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGC 49525 Query 38290 CCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || || ||||| |||||||| Sbjct 49524 CCGTCAACGTCTTGACGAAAATCTGCAT 49497 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||||||||||| ||||| ||||| || || | | ||| | || || || || Sbjct 49982 TGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAACTGC 49923 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || ||||| || ||||| | |||| || || |||||| || || Sbjct 49922 TTGCCAGCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATCTTG 49863 Query 38235 TGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTAATAGTTTTACCCG 38292 ||| ||||| | || || || | || ||||| || | || || || || || | Sbjct 49862 GCCTTGACATTGTCGATGGTGTCAGACGAC--TCAACCTCCAGAGTGATCGTCTTGCCGG 49805 Query 38293 TCAAGGTTTTCACGAATATCTGCATG 38318 ||| || || ||||| ||||||||| Sbjct 49804 TCAGCGTCTTAACGAAAATCTGCATG 49779 >seq1 Length=721539 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || ||||| || | ||||||||| ||||| ||||| ||||||||||| Sbjct 157416 CCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGAA 157475 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || | || || || || || || || ||||| ||||| | || Sbjct 157476 AGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGGA 157535 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || ||| ||| || |||||| || | || || || || || Sbjct 157536 ATACCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACC 157595 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || |||||||| || || ||||| ||||||||| Sbjct 157596 TCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTGCATG 157643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944293495672