Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq71 109 1e-18 seq70 104 5e-17 >seq71 Length=136494 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||| | || || |||||||||||||||||||| || ||| | ||||| || || | Sbjct 93365 GGTGCCCTCTCTGGTGGTTGGAAGATGAAGCTCGCGCTCGCCCGCGCGATGCTCTTCAAG 93306 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 || || | || ||||| |||||||| ||||||||| |||| | |||||| || ||| Sbjct 93305 GCTGACATTCTTCTGCTCGATGAGCCCACCAACCACTTGGATGTCGTCAACGTCGCGTGG 93246 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| ||||| || | || | || |||| || || ||||||||| Sbjct 93245 CTCGAGGGCTACCTCACCAGCCTCACCAACTGCACGTCGATCATCGTTTCGCACGACTCT 93186 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 93185 GGCTTCCT 93178 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||| ||||||||| |||| | ||||||||||| ||||||| ||||| ||||| ||| Sbjct 93770 GGTGAAGATCTGTGTAACTGCCAGTTCTCGCTCGCGTATGGTGCCAAGATCCTGCTCAAC 93711 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || || ||| |||||||||| |||| || |||||| ||| || || | Sbjct 93710 ACTGCCACTCTCCGTCTCAAGCGTGGTCACCGCTACGGTCTCTGCGGCAGGAACGGTACC 93651 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGG 279499 || ||| ||| || ||||| || ||| | ||||| Sbjct 93650 GGAAAGTCCACCCTCATGCGTGCGATTACCAACGG 93616 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/187 (72%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 || |||||||||| ||| | || ||||| || || |||| |||| | || || ||| Sbjct 92882 TCCTTGGACCCAACGGTTCCGGCAAGTCGACGCTCGTCAAGCTCCTCATCGGTGATACCG 92823 Query 280234 AGGCCA-CTGAGG-GGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290 || | | | | || ||| | |||||||| || ||| || || | ||| ||||| | Sbjct 92822 AGCCGAACCGTGGCGGTGAGACCTGGAAGCACCCTAACCTGGTCATCGGTTATGTCGCCC 92763 Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350 |||||||||||||||||||||| | ||||| |||| ||| || | | ||||| | | Sbjct 92762 AGCACGCTTTCCACCACATCGACCAGCACCTCGACAAGACCCCGCTCGAGTACATGCTCT 92703 Query 280351 GGCGCTA 280357 |||| || Sbjct 92702 GGCGTTA 92696 >seq70 Length=136885 Score = 104 bits (114), Expect = 5e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||||||||| | |||||||| ||| || || || |||||||||||||| ||||| ||| Sbjct 72882 TCGAAGAAATTGGTCTTGCCCTGCAGTGAAATCAGGTCCATGAAGTCGAATGGGTTCGTG 72941 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | || || | || | || |||||| || || ||||| | Sbjct 72942 GCGTTGTAGTGCTTTTCGTTCCCGAGCGAGACCAGGAGGCGGTCCGCGACGAACTCGATG 73001 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||||| | |||||| | ||||||||| || Sbjct 73002 TACTGGCACATCAGCGGGGCGTTCATGCCGAT 73033 Score = 104 bits (114), Expect = 5e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| || ||||| || |||||||||||||||||||| || Sbjct 76153 TCGAAGAAGTTTGTCTTACCCTGGAGCGAGATGAGGTCCATGAAGTCGAAGGGGTTCGTC 76094 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||||| ||| || | |||||| || || | | ||| ||||| || ||||| | Sbjct 76093 GCGTTGTACACCTTCGGGTCGCCAAGCGCGACAAGCAGGCGATCTGCGACGAACTCGATG 76034 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||||| | ||| || | | |||||||| || Sbjct 76033 TACTGGCACATGAGCTTCGCATTCATGCCGAT 76002 Score = 91.5 bits (100), Expect = 3e-13 Identities = 353/544 (65%), Gaps = 23/544 (4%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| |||||| || || ||||||| |||||| || | |||||| ||||| | || Sbjct 75819 GTGCATACCCTCATCACGGCTGATGAGCTCGTTCGAGAACGTCAGGCCGGGCATGAGACC 75760 Query 251904 ACGGTTCCTGAGCCAGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACAC 251962 || ||| ||||||||||||| | ||| || || |||||||| | | ||||||||| Sbjct 75759 GCGCTTCTTGAGCCAGAAGATCGACGC-GAACGAGCCAGAGAAGAAGATACCCTCGACCG 75701 Query 251963 ACACCCATGCAACAAGGCGCTCAGCAAACGA------CTTGTCCTGCGA--CAA-GAACT 252013 | | |||| ||| ||||| || ||||| ||||||| | || ||| | | Sbjct 75700 CTGCGAAGGCAATAAGACGCTCGGCGAACGAGGATTTCTTGTCC-GAGATCCAACGGA-- 75644 Query 252014 TCTGTGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAG 252073 | ||||| | |||||||| | |||||| || ||||| || ||||| || | Sbjct 75643 ---GGGCCCAGTCCGCCTTCTTCTTGATGCAGGGGATGGTGTCGATCGCGTCAAACAG-G 75588 Query 252074 AGTTC-CGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAA 252132 | || |||| | ||||| ||| | || | ||||| |||||| |||| || Sbjct 75587 TGCTCACGCTGCGTGGGGTCCTTGATATAGGTGTCGATGAGGAGCGAGTACGTCTCGGAG 75528 Query 252133 TGGATGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACT 252192 |||||| || | | |||||| | | ||||| || || || | ||| Sbjct 75527 TGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACCGTGCCTCAGCAACCTGTACT 75468 Query 252193 TCCGTGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAG 252252 || |||| || | | | ||||| | || ||||| ||| | || || ||| Sbjct 75467 TCGTTGGAGAACCGCTCGACGAGATTCTCATTGACAATGCCGTCGGACGCAGCGAAAAAG 75408 Query 252253 CCAAGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCA 252312 | || | | | ||||||||| ||||| |||||||| || || ||||||| Sbjct 75407 GCGAGGACGTGCGAGATGAAGTGGCGCTCGTCGTCGTTCAGACGGTTGTGCCAGTCATGC 75348 Query 252313 ATGTCCTGATTCAGAGGAACTTCT--TCCACCGTCCAGAATGTGGACACCGCCTTCTTGT 252370 | ||||| | | ||| | ||| || | |||||||| | | | | |||||||||| Sbjct 75347 AGGTCCT--TGGATAGGTCCATCTCCTCTGCGGTCCAGAACGACGCCTCAGCCTTCTTGT 75290 Query 252371 ACAT 252374 |||| Sbjct 75289 ACAT 75286 Score = 84.2 bits (92), Expect = 4e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| |||||| ||||| ||||||| |||||| || | |||||| ||||| | || Sbjct 73219 GTGCATACCCTCATCGCGGCTGATGAGCTCGTTCGAGAACGTCAGGCCGGGCATAAGACC 73278 Query 251904 ACGGTTCCTGAGCCAGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACAC 251962 ||| ||| ||||||||||||| | ||| || || || ||||| | | || ||||| Sbjct 73279 ACGCTTCTTGAGCCAGAAGATCGACGC-GAACGAGCCGGAGAAGAAAATGCCTTCGACCG 73337 Query 251963 ACACCCATGCAACAAGGCGCTCAGCAAACG 251992 | | |||||||| ||||| | ||||| Sbjct 73338 CGGCGAACGCAACAAGCCGCTCCGTAAACG 73367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827423558792