Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq52 96.9 3e-15 seq1 82.4 6e-11 >seq52 Length=153599 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 33920 CCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCGCTCGTCGTCC 33978 |||||||||| |||||||||||||| |||||||| || | | | || || |||| || Sbjct 49704 CCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGC-CGTCTTCG 49646 Query 33979 AATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATA 34038 | |||||||| ||||| |||||||||||||| || ||| | || ||| |||||| | Sbjct 49645 AGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGA 49586 Query 34039 ATTTT 34043 ||||| Sbjct 49585 ATTTT 49581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33922 AGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGTCCAAT 33981 || ||||| ||||||||||||||||||||||| || | | || | || ||||| Sbjct 49985 AGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAAC 49926 Query 33982 TGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCC 34035 |||||||| ||||| || ||||||||||||||| || | | ||| |||||| Sbjct 49925 TGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCC 49872 >seq1 Length=721539 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| ||||| || |||||||| || |||||||||||||||||||| | Sbjct 157416 CCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGAA 157475 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || ||| |||| |||| |||||||| || || || || || |||||||| Sbjct 157476 AGAGTG-CGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATC 157528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397058954491024