Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq52 149 1e-30 seq1 145 2e-29 seq70 104 6e-17 seq116 84.2 5e-11 >seq52 Length=153599 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || | |||| ||||| || || ||||| || ||||| | | Sbjct 50287 CCGCCACGCAGACGAAGGACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGAG 50228 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || ||||| | || || || |||||||| || ||||| || ||| Sbjct 50227 AGCGTGCGACCATCTTCAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 50168 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || || || ||||| || || | |||| ||| || || Sbjct 50167 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTCAACC 50108 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| ||||||| ||||||||||| |||||||| Sbjct 50107 TCCAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 50061 Score = 132 bits (146), Expect = 1e-25 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 |||| |||| ||||| || || || || || ||||| | || ||||| || || || | Sbjct 49423 CGAGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGA 49364 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 || || || |||||||| |||||||| || ||||| || || || ||||||| Sbjct 49363 GCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGA 49304 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | || || || ||||| ||||||| || ||||| || ||||| || |||||||||| Sbjct 49303 TCTTGGCCTTGACGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCC 49244 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| |||||||| || |||||||| Sbjct 49243 CTGTCAGGGTCTTGACAAAGATCTGCAT 49216 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 || |||| ||||| || || || || || ||||||| ||| || || || || || || Sbjct 49985 AGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAAC 49926 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || ||||| || ||||| ||| |||||| || || || |||||||| Sbjct 49925 TGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATC 49866 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || || || || | || ||| || || || || ||||||||||| ||| Sbjct 49865 TTGGCCTTGACATTGTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGCCG 49806 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||| Sbjct 49805 GTCAGCGTCTTAACGAAAATCTGCAT 49780 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 ||||||| ||||| || || ||||| || ||||| | || ||||| |||||||| | Sbjct 49702 AGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGAGC 49643 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || |||||||| ||||| || ||||| || || || ||||| ||| Sbjct 49642 TGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATT 49583 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || || || || | || || || || ||||| ||||| ||||| || Sbjct 49582 TTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCC 49523 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 |||| ||||||||||| |||||||| Sbjct 49522 GTCAACGTCTTGACGAAAATCTGCAT 49497 >seq1 Length=721539 Score = 145 bits (160), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | ||| ||||| || | || || || ||||||||||| | Sbjct 157640 CATG-CCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAAT 157698 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | |||||| ||||| || | || || || |||||||| || ||||| ||| Sbjct 157699 CGGACAACGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGG 157758 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || ||||| || ||||| |||||||| || || | || || | Sbjct 157759 GAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACT 157818 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||||||||||||| |||||||| || |||||||| ||||| |||||||| Sbjct 157819 CGACTTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 157870 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || |||| || || || ||||| || || || | Sbjct 157188 CCACCACGGAGACGAAGAACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGAC 157247 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| | ||||| || | || || || ||||||||||| |||||||| ||| ||| Sbjct 157248 AGCGTCCTGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTG---ATCGGGG 157304 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || |||||||| || ||||| |||||||| || || | ||| || ||| Sbjct 157305 GGAATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATCGTGTCGGAAGACTCT 157364 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||||||||| || || || ||||||||||| |||||||| Sbjct 157365 ACCTCCAGGGTGATCGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCAT 157414 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | ||| ||||| || | || || || |||||||| |||| Sbjct 158156 CATG-CCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGT 158214 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | || || ||||| || | || || || |||||||| |||||||| || Sbjct 158215 CGGACAAGGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGG 158274 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || ||||| || ||||| |||||||| || || | || |||| Sbjct 158275 GAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGATT 158334 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 158335 CGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 158386 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | || |||||||||| || ||| || || || || || | Sbjct 157412 CATG-CCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAAT 157470 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| ||||| || | || || || |||||||| ||||| || ||| | Sbjct 157471 CAGAAAGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAG 157530 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || |||||||| || ||||| |||||||| || || | || || | Sbjct 157531 GAGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACT 157590 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || | |||||||||||| || |||| ||||| ||||| |||||||| Sbjct 157591 CGACCTCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTGCAT 157642 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || || ||||| || ||||| || ||||| || |||| ||| || || || ||| Sbjct 158566 CCCTCCTTGTCCTGAATCTTCGCCTTTACGTTGTCGATAGTGTCGGAAGACTCGACCTCG 158625 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 |||||||| ||||||||||| |||||||| || || |||||||| |||| Sbjct 158626 AGCGTGATGGTCTTCCCGGTGAGAGTCTTAACAAAGATCTGCATGATGT 158674 >seq70 Length=136885 Score = 104 bits (114), Expect = 6e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTAT-CTT 269210 ||||| |||||||| | |||||| || || ||||| ||||| || ||||| | ||| Sbjct 76002 ATCGGCATGAATGCGAAGCTCATGTGCCAGTACATCGAGTTCGTCGCAGATCGCCTGCTT 76061 Query 269211 CACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACT 269270 || | || || | ||| |||||||| ||| ||| ||||||| ||| ||||| || Sbjct 76062 GTCG-CGCTTGGCGACCCGAAGGTGTACAACGCGACGAACCCCTTCGACTTCATGGACCT 76120 Query 269271 AATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTA 269321 || |||||| | || ||||| ||||||||||| ||||| ||| ||||| Sbjct 76121 CATCTCGCTCCAGGGTAAGACAAACTTCTTCGAGAAGCGAGTCTCGGACTA 76171 >seq116 Length=96108 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || || |||||||| || || || ||||| || || | ||| || || || ||| Sbjct 9945 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCG 10004 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| || || ||||||||||| |||||||| Sbjct 10005 AGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 10048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179643638602736