Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq52 113 5e-20 >seq1 Length=721539 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| |||||||| || |||||||||||||| | | |||||| |||| Sbjct 157431 AGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCGTCC 157490 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || || ||||| || |||||||| || || || || Sbjct 157491 TCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGGAATACCCTCCTTATCC 157550 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || ||| || || || || | || | ||| Sbjct 157551 TGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACCTCCAACGTGATCGTC 157610 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || |||||||| || ||||| Sbjct 157611 TTGCCCGTCAACGTCTTTACGAAGATCTGCAT 157642 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || |||||||||||||||| | ||||| | || || ||||||||||| Sbjct 157962 GTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCAGCTGCTTGCCA 158021 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| |||||||| || || || || || || || || || || || ||| Sbjct 158022 GCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCGCCTTG 158081 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||| ||| | || || || | || | ||||||||||||||| || Sbjct 158082 ACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGCCGGTCAATGTC 158141 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 158142 TTAACGAAGATCTGCAT 158158 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | ||| || || || | || || || || || || ||||| || | Sbjct 158160 CCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAC 158219 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || |||| || |||||||||||||| | || || |||||||||||||||||| Sbjct 158220 AAGGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 158279 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | || ||| || || || Sbjct 158280 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGATTCGACC 158339 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| || || ||||| || ||||| Sbjct 158340 TCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 158386 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | ||| || || || | || || || || || || || ||||| | Sbjct 157644 CCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGAC 157703 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| |||||||||||||| || | || || |||||||| |||||||| Sbjct 157704 AACGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGGG 157763 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | || ||| || || ||| Sbjct 157764 ATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACT 157823 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || || | ||| || ||||| || ||||| Sbjct 157824 TCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 157870 >seq52 Length=153599 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | ||| || | |||| || || || || |||||||| |||| | Sbjct 50287 CCGCCACGCAGACGAAGGACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGAG 50228 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||||||||||||||| || | ||||| |||||||||||||| || Sbjct 50227 AGCGTGCGACCATCTTCAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 50168 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | ||||| | || || Sbjct 50167 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTCAACC 50108 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||||||||||| || || |||||||| ||||| Sbjct 50107 TCCAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 50061 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | | ||||| ||||||| ||||||||||| ||| | Sbjct 49687 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCAAAG 49628 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || |||||||||||||| || || || || || || || ||||| ||| ||| Sbjct 49627 ATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATTTTGGCCTTGACATTG 49568 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || || ||||| || | || | ||||||||| ||||| || || ||| Sbjct 49567 TCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAACGTCTTGACG 49508 Query 64433 AAAATTTGCAT 64443 ||||| ||||| Sbjct 49507 AAAATCTGCAT 49497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | || || || | || || | ||||||||| ||| | Sbjct 49970 TCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAACTGCTTGCCAGCAAAG 49911 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| |||||||| || || || || || || || || || || || ||| ||| Sbjct 49910 ATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 49851 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || ||| | || || || | ||| | ||||||||||||| || || ||| Sbjct 49850 TCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGCCGGTCAGCGTCTTAACG 49791 Query 64433 AAAATTTGCAT 64443 ||||| ||||| Sbjct 49790 AAAATCTGCAT 49780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499640353161280