Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq70 109 5e-19 seq52 105 7e-18 seq37 100 3e-16 seq1 91.5 1e-13 >seq70 Length=136885 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 || ||||| || | || | ||||||||||| | | |||||| ||||||||||||| Sbjct 73051 GCACTGCCCGTTGCACTCATCGGCATGAACGCCCCGCTGATGTGCCAGTACATCGAGTTC 72992 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCG 52769 || ||||| || || |||| ||||||| | |||| ||| |||||| || || Sbjct 72991 GTCGCGGACCGCCTCCTGGTCTCGCTCGGGAACGAAAAGCACTACAACGCCACGAACCCA 72932 Query 52770 TTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTC 52829 || || || ||| || ||||| || ||||||||||||| || ||||||||||| ||| Sbjct 72931 TTCGACTTCATGGACCTGATTTCACTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGTC 72872 Query 52830 GGCGAGTA 52837 ||| || Sbjct 72871 TCCGATTA 72864 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 ||||||||| || || | |||||||| ||| || ||||||| ||||||||||||| Sbjct 75984 GCGCTGCCGTGCGCACTCATCGGCATGAATGCGAAGCTCATGTGCCAGTACATCGAGTTC 76043 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCG 52769 || || ||||| ||| | || ||| || | || ||| | |||||| || || Sbjct 76044 GTCGCAGATCGCCTGCTTGTCGCGCTTGGCGACCCGAAGGTGTACAACGCGACGAACCCC 76103 Query 52770 TTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTC 52829 || || || ||| || ||| ||||| |||| ||||| ||||| ||||||||||||||| Sbjct 76104 TTCGACTTCATGGACCTCATCTCGCTCCAGGGTAAGACAAACTTCTTCGAGAAGCGAGTC 76163 >seq52 Length=153599 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | |||||| ||||| | || || || | | | Sbjct 49971 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAACTGCTTGCCAGCAAA 49912 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| || ||||| || ||||| || ||||| || ||||| ||| || || | ||| Sbjct 49911 GATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 49852 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | |||||| | |||||| ||||| | || | ||| || || ||||| || || | Sbjct 49851 GT-CGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGCCGGTCAGCGTCTTAA 49793 Query 138602 CAAAAATCTGCATGGCT 138618 | |||||||||||| || Sbjct 49792 CGAAAATCTGCATGCCT 49776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| |||||||||||||| || ||| || |||||||| || || || | | Sbjct 49407 CTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 49348 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| |||||||| ||||| || || || || || ||||| ||| || || | | Sbjct 49347 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 49288 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | || |||||||||| || | ||| || || ||||| || || || Sbjct 49287 GTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCTGTCAGGGTCTTGAC 49228 Query 138603 AAAAATCTGCAT 138614 ||| |||||||| Sbjct 49227 AAAGATCTGCAT 49216 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || ||||||||||| | ||| || ||| ||||| || || || | | | Sbjct 49688 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCAAA 49629 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| || ||||| ||||| || || || || || ||||| ||| |||| | || | | Sbjct 49628 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATTTTGGCCTTGACAT 49570 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 ||| | | |||||| | ||||||||||||| || | || || || |||| || || Sbjct 49569 TGT-CAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAACGTCTTG 49511 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 49510 ACGAAAATCTGCAT 49497 >seq37 Length=175141 Score = 100 bits (110), Expect = 3e-16 Identities = 297/450 (66%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 153072 ACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCG 153131 |||| |||||| | || || ||| ||||||| ||| || |||||| || | ||| Sbjct 161092 ACATACCTAGTGTACGGCTCGAAGCATTCGTTGAAGCCGAGGATTTGACTTGTCGACGCG 161151 Query 153132 GTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCG-TGCGCTCGAATGTCGTCCTT 153190 || |||||| ||| || | | || |||||||| ||| | || ||| | ||| |||| Sbjct 161152 GTGGGCATGGGCGCAACGAGAAGCGAGTTCCGCAAACCGGTACGAGCGACTTTCG-CCTT 161210 Query 153191 CAACGCCTG-CCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACA 153249 || || | ||| ||||| || | | ||| || | ||| | ||| ||||| | | Sbjct 161211 CAG-GCTAGTCCAGTCCCAGAGGTCGGTCGGGGTGATGCCCCAGAGGTCATACTGCAGCT 161269 Query 153250 CTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTT 153309 | || | || || ||||| | |||| ||| || || | |||| | Sbjct 161270 CGCCCCTGGAAGCAGGGCTGCCCTCGTACGTCTCGTAAGGACCATCCTTCTCCGCCATGT 161329 Query 153310 CGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGG 153369 ||| ||| ||||||| || ||| ||| || |||||| ||| || || ||||| || Sbjct 161330 CGCTGCTCGCCTCGACAGCAGCATGGTAGATCGTTTCGAAGATCTGCTTGTTGAGCTCGC 161389 Query 153370 CCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGA 153429 || || |||| | ||||||||||| || |||| |||||| |||||||| | Sbjct 161390 GTGCCTCAGGCGACTCGAAGGGCATGCGCAGAGCCATGAAGGTGTCGGCAAGACCCTGCA 161449 Query 153430 TACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAG 153488 |||||| ||||| || ||||| | ||| ||| | || ||| | ||||||||| Sbjct 161450 CACCGACACCGATCGGCCGATGACGCATGTTCGAGCGGCGGGC-CTCGGGGATGGGATAG 161508 Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTG 153518 | ||| || || || |||||||||| Sbjct 161509 TAGTTGACGTCAATGATGCGGTTGAGGTTG 161538 >seq1 Length=721539 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | ||| | | || ||||| ||||||||||| || Sbjct 157415 GCCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGA 157474 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| ||| |||||| || || || || | |||| ||||| || || || ||||| Sbjct 157475 AAGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGG 157534 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| || || || ||| | || | || | ||| || | ||||| | ||||| Sbjct 157535 AATACCCTCCTTATC-CTGAATCTTCGCCTTCACGTTG-TCGATCGTGTCAGAGGACTCG 157592 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| | ||| | ||| || || |||| || ||||| || ||||||||| Sbjct 157593 ACCTCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTGCATG 157643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257983264640