Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 129 6e-25 seq52 107 2e-18 seq70 95.1 1e-14 >seq1 Length=721539 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || ||||| |||||| || ||||||| || || ||||| || ||| Sbjct 157674 GTAGACTCCTTCTGGATATTATAATCGGACAACGTGCGACCGTCCTCAAGCTGCTTGCCA 157733 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||||||||| || |||||||||||| || ||| ||| Sbjct 157734 GCGAAGATAAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTC 157793 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||| | ||||||||||| || | || || || || ||||| Sbjct 157794 ACGTTG-TCGATCGTGTCAGAGGACTCGACTTCGAGCGTGATTGTCTTCCCCGTGAGAGT 157852 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 157853 CTTCACGAAGATCTGCAT 157870 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| |||||||| || |||||| ||| || ||||| || ||| Sbjct 157962 GTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCAGCTGCTTGCCA 158021 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | ||||||||||| || || || |||||||| ||| || ||| |||| Sbjct 158022 GCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCGCCTTG 158081 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | |||||| |||| || | || |||||||||| || Sbjct 158082 ACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGCCGGTCAATGTC 158141 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 158142 TTAACGAAGATCTGCATG 158159 Score = 114 bits (126), Expect = 1e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || |||||||| ||| || || ||| || || ||||| || || Sbjct 158190 GTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCGTCCTCCAGCTGCTTGCCG 158249 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| |||||||| ||||||||||||||| || ||| ||| Sbjct 158250 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTC 158309 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||| | ||||| |||| || | || ||||| ||||| || Sbjct 158310 ACGTTG-TCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGT 158368 Query 127096 TTTTACAAAAATCTGCATGGCT 127117 || || || ||||||||| || Sbjct 158369 CTTGACGAAGATCTGCATGCCT 158390 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || |||||||| || ||| | || || ||||| || ||| Sbjct 157218 GTAGACTCCTTCTGGATGTTGTAATCCGACAGCGTCCTGCCGTCCTCAAGCTGCTTGCCA 157277 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||| |||||||| || ||||||||||| ||| || ||| ||| Sbjct 157278 GCGAAGATCAGGCGCTGTTGATCGGGGGGAATGCCCTCCTTATCCTGAATCTTCGCCTTC 157337 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||||| | | ||| || || | ||| | ||| || || || || || Sbjct 157338 ACGTTG-TCAATCGTGTCGGAAGACTCTACCTCCAGGGTGATCGTCTTTCCAGTGAGCGT 157396 Query 127096 TTTTACAAAAATCTGCATGGCT 127117 || || || ||||||||| || Sbjct 157397 CTTGACGAAGATCTGCATGCCT 157418 >seq52 Length=153599 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| || || ||||| ||| || ||||| || || ||| | Sbjct 49407 CTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 49348 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||| | |||||||| ||||| || ||||||||||||||| ||| || ||||| ||| Sbjct 49347 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 49288 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | || | ||||||| || || |||| ||| | ||| || || ||||| || || | Sbjct 49287 G-TCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCTGTCAGGGTCTTGA 49229 Query 127101 CAAAAATCTGCAT 127113 |||| |||||||| Sbjct 49228 CAAAGATCTGCAT 49216 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| ||| | || || ||| || | ||| || ||||| | Sbjct 49971 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAACTGCTTGCCAGCAAA 49912 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||| | ||||||||||| || || || |||||||||||| ||| || ||||| | Sbjct 49911 GATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 49852 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||| | ||| || || | || | ||| ||||||||||| || || || Sbjct 49851 GTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGCCGGTCAGCGTCTTAAC 49792 Query 127102 AAAAATCTGCATGGCT 127117 |||||||||||| || Sbjct 49791 GAAAATCTGCATGCCT 49776 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| || | ||||||| ||| || ||||| || || ||| | Sbjct 50252 CTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGACCATCTTCAAGCTGCTTGCCCGCGAA 50193 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||| | |||||||| ||||| || ||||||||||| ||| ||| || ||||| ||| Sbjct 50192 GATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTT 50133 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 || | | ||| || | ||| || || | || | ||| |||||||||| || || | Sbjct 50132 GT-CAATGGTATCGGACGACTCAACCTCCAGAGTGATCGTCTTGCCGGTCAAGGTCTTGA 50074 Query 127101 CAAAAATCTGCATGGCT 127117 | |||||||||||| || Sbjct 50073 CGAAAATCTGCATGCCT 50057 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| |||||||| ||||| || |||||||||||| Sbjct 49651 TCTTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 49592 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||||| ||||| | || | |||||||| ||| || |||| ||| | Sbjct 49591 TCCTGAATTTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATG 49532 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| || || || ||||||||||| Sbjct 49531 GTCTTGCCCGTCAACGTCTTGACGAAAATCTGCAT 49497 >seq70 Length=136885 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||||| | ||||| | |||||||||| || ||||| |||||||| || || Sbjct 73030 GGCATGAACGCCCCGCTGATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTCCTGGTC 72971 Query 47472 CAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATT 47531 ||| | | ||| ||| || || ||| |||||||| || ||| || ||| Sbjct 72970 TCGCTCGGGAACGAAAAGCACTACAACGCCACGAACCCATTCGACTTCATGGACCTGATT 72911 Query 47532 TCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || || ||||||||||||| || ||||||||||||||| ||| || Sbjct 72910 TCACTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGTCTCCGATTA 72864 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || ||||| ||| || | ||| | |||||||||| || ||||| || |||||||| || Sbjct 76005 GGCATGAATGCGAAGCTCATGTGCCAGTACATCGAGTTCGTCGCAGATCGCCTGCTTGTC 76064 Query 47472 CAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATT 47531 ||| | || ||| | ||| || | ||| || ||||| || ||| || ||| Sbjct 76065 GCGCTTGGCGACCCGAAGGTGTACAACGCGACGAACCCCTTCGACTTCATGGACCTCATC 76124 Query 47532 TCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570 |||||| |||| ||||| ||||| ||||||||||| ||| Sbjct 76125 TCGCTCCAGGGTAAGACAAACTTCTTCGAGAAGCGAGTC 76163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496568042880