Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 147 5e-30 seq116 111 4e-19 seq52 109 1e-18 >seq1 Length=721539 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| |||| |||||||| | ||| || | || || Sbjct 158175 AGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCGTCC 158234 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| |||||||||||||| ||| ||| || || ||| Sbjct 158235 TCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 158294 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| |||| ||||| | | ||| || || | |||||| ||| Sbjct 158295 TGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTC 158354 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || || || Sbjct 158355 TTGCCCGTCAGGGTCTTGACGAAGATCTG 158383 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || |||||||| ||||| || | |||||| |||| | ||| Sbjct 157422 CGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGAAAGAGTG 157481 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| ||||| ||||| || ||| ||| || Sbjct 157482 CGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGGAATACCC 157541 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||| |||| ||||| | | || || |||||| Sbjct 157542 TCCTTATCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACCTCCAAC 157601 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| | || || || || || || Sbjct 157602 GTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTG 157639 Score = 132 bits (146), Expect = 1e-25 Identities = 96/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||||||||||||||||||||| |||| ||||||||| | ||| || Sbjct 158394 CGAAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAACGTG 158453 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | ||||||||||||||||| || |||||||| |||||||||||||| ||| Sbjct 158454 CGGCCATCTTCCAGCTGCTTCCCCGCGAAGATCAGACGCTGCTGGTCGGGA 158504 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || |||||||| |||| |||||| || | || ||||| || || Sbjct 157203 AGAACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGACAGCGTCCTGCCGTCC 157262 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| || ||||| || || || ||| || || ||| Sbjct 157263 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCGGGGGGAATGCCCTCCTTATCC 157322 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| || | ||||| | | ||||| |||| ||||||||| Sbjct 157323 TGAATCTTCGCCTTCACGTTGTCAATCGTGTCGGAAGACTCTACCTCCAGGGTGATCGTC 157382 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 157383 TTTCCAGTGAGCGTCTTGACGAAGATCTG 157411 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| |||| || || || | ||| || | || || Sbjct 157659 AGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGACAACGTGCGACCGTCC 157718 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| || |||||||| || ||| || || || ||| Sbjct 157719 TCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCC 157778 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| |||| ||||| | | || || || | |||||| ||| Sbjct 157779 TGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACTTCGAGCGTGATTGTC 157838 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| ||||| || || || Sbjct 157839 TTCCCCGTGAGAGTCTTCACGAAGATCTG 157867 Score = 104 bits (114), Expect = 6e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| ||||| |||||||| || | |||||| || | || || | ||||| |||| Sbjct 157951 CAAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCA 158010 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||| || ||||| |||||||||||||| || || || || || ||||||| Sbjct 158011 GCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAA 158070 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| || |||| ||||| | || || || || | ||||| ||||| | Sbjct 158071 TCTTCGCCTTGACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGC 158130 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | || | || || || || || || Sbjct 158131 CGGTCAATGTCTTAACGAAGATCTG 158155 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| || |||||| | || || || ||||| || | ||||||||| ||||| Sbjct 157288 CTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCAGGACGCTGTCGGATTACAACATCCAG 157229 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 || |||||||| |||||||||||| Sbjct 157228 AAGGAGTCTACACTTCACCTTGTT 157205 >seq116 Length=96108 Score = 111 bits (122), Expect = 4e-19 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| |||||||| |||| ||||||||| || || | ||||| Sbjct 9773 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 9832 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| |||||||||||||| |||||||||||||| Sbjct 9833 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGG 9873 >seq52 Length=153599 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 ||||| || || |||||| || | ||||||||||| || ||| | ||||| || ||| Sbjct 49421 AGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGC 49362 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || ||||||||||||||||||||||| || || || || ||||| ||| Sbjct 49361 TGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC 49302 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| ||| || | ||||| | | ||| || || | || |||||||| || Sbjct 49301 TTGGCCTTGACGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCT 49242 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| || || Sbjct 49241 GTCAGGGTCTTGACAAAGATCTG 49219 Score = 104 bits (114), Expect = 6e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| || || |||||| || | ||||||||| | | ||| | ||||| |||| Sbjct 49987 CAAGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCA 49928 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 |||||| || || |||||||| |||||||| ||||| || || || ||||| | Sbjct 49927 ACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGA 49868 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| || |||| |||||| | | || || |||| ||||||||||| | Sbjct 49867 TCTTGGCCTTGACATTGTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGC 49808 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || || || ||||| || Sbjct 49807 CGGTCAGCGTCTTAACGAAAATCTG 49783 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || |||||| |||| ||||||||| | | || | |||||| Sbjct 50272 AGGACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGACCATCT 50213 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||| ||||||||||| || || || || ||| Sbjct 50212 TCAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCC 50153 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||| || | | || || |||| ||||||||| Sbjct 50152 TGGATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTCAACCTCCAGAGTGATCGTC 50093 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || ||||| || Sbjct 50092 TTGCCGGTCAAGGTCTTGACGAAAATCTG 50064 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| |||| ||||||||| | | ||| | || ||||| |||||||| || || || Sbjct 49688 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCAAA 49629 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| || ||||||||||| || || || || |||||||| || ||| || Sbjct 49628 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATTTTGGCCTTGACATT 49569 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 || | |||||| | | || || || | ||||| ||||| ||||| | || || || Sbjct 49568 GTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAACGTCTTGAC 49509 Query 199618 AAAAATTTG 199626 ||||| || Sbjct 49508 GAAAATCTG 49500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178910845287704