Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq52 150 2e-31 seq1 150 2e-31 seq55 91.5 2e-13 seq116 82.4 9e-11 >seq52 Length=153599 Score = 150 bits (166), Expect = 2e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 46386 CCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGA 46445 ||||||| | || |||||||| ||||| |||||||| || |||||||| |||| |||| Sbjct 49704 CCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGA 49645 Query 46446 GCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGA 46505 |||||||||| || || |||| |||||||||||||| ||| | || |||||||||| | Sbjct 49644 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAA 49585 Query 46506 TCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGC 46565 | || ||||| | | | ||||| || ||||| || | |||||||| |||| Sbjct 49584 TTTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGC 49525 Query 46566 CCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| ||| || || || || ||||| Sbjct 49524 CCGTCAACGTCTTGACGAAAATCTGCAT 49497 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || || |||||||| || |||||||| | || |||||||||||||| Sbjct 49412 GTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCC 49353 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | ||||||||||||| ||| | || |||||||||| |||||| |||| Sbjct 49352 GCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 49293 Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | ||| | | | ||||| |||||||| || | || || || || || ||||| || Sbjct 49292 A-CGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCTGTCAGGGT 49234 Query 46576 TTTAACAAAGATTTGCAT 46593 || |||||||| ||||| Sbjct 49233 CTTGACAAAGATCTGCAT 49216 Score = 129 bits (142), Expect = 7e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| |||||||| || || ||||| | || || ||||||||||| Sbjct 50257 GTGCTCTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGACCATCTTCAAGCTGCTTGCCC 50198 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | |||||||||||||| ||| | || |||||| ||| |||||| |||| Sbjct 50197 GCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 50138 Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | ||| | | | || ||| ||| || || |||| ||||| || ||||| |||| || Sbjct 50137 A-CGTTGTCAATGGTATCGGACGACTCAACCTCCAGAGTGATCGTCTTGCCGGTCAAGGT 50079 Query 46576 TTTAACAAAGATTTGCAT 46593 || || || || ||||| Sbjct 50078 CTTGACGAAAATCTGCAT 50061 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || || ||||||||||| ||||| || | || || | ||||||||| Sbjct 49976 GTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAACTGCTTGCCA 49917 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || || | ||||||||| || | || | | |||||||||| |||||| |||| Sbjct 49916 GCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 49857 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | ||||| ||| || || |||| ||||| || ||||| |||||||| Sbjct 49856 ACATTGTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGCCGGTCAGCGTC 49797 Query 46577 TTAACAAAGATTTGCAT 46593 ||||| || || ||||| Sbjct 49796 TTAACGAAAATCTGCAT 49780 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||| | || |||||||| ||||| ||||||||||| || ||||| |||| |||||| Sbjct 49140 AGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGC 49081 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 || || || ||||| || | |||||||||||| | || | ||| ||| Sbjct 49080 TGTTTACCAGCGAAAATGAGGCGCTGCTGGTCAGGTGGGATGCTGTCC 49033 >seq1 Length=721539 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || |||| ||| |||||| ||||||||||||||||| | || || |||| || Sbjct 158178 ACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCGTCCTCC 158237 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| || | ||||||||||||| || | || |||||||||| Sbjct 158238 AGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGA 158297 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | ||| | | | |||||| ||||| || || | ||||||||| || Sbjct 158298 ATCTTCGCCTTCA-CGTTGTCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTCTT 158356 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| || || || ||||| ||||| Sbjct 158357 GCCCGTCAGGGTCTTGACGAAGATCTGCAT 158386 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| || ||||| | || ||||| || || ||||| || | Sbjct 157414 TGCCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAG 157473 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||||||| |||| || ||||||||||| ||||| || | || ||||| || | | Sbjct 157474 AAAGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAG 157533 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | |||||| ||| |||||| ||| | ||| | | | |||||| || || Sbjct 157534 GAATACCCTCCTTATCCTGAATCTTCGCCTTCA-CGTTGTCGATCGTGTCAGAGGACTCG 157592 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||| || |||||||||| ||| || || ||||| ||||| Sbjct 157593 ACCTCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTGCAT 157642 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || |||| ||| |||||| |||||||| || ||||| | ||||| |||| || Sbjct 157662 ACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGACAACGTGCGACCGTCCTCA 157721 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| || | ||||||||| |||| || | | |||||||||| Sbjct 157722 AGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGA 157781 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | ||| | | | |||||| || || || || | |||||| || || Sbjct 157782 ATCTTCGCCTTCA-CGTTGTCGATCGTGTCAGAGGACTCGACTTCGAGCGTGATTGTCTT 157840 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || || ||||| ||||| Sbjct 157841 CCCCGTGAGAGTCTTCACGAAGATCTGCAT 157870 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || || | |||| |||||| ||||| ||||| || || || || | |||| || Sbjct 157206 ACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGACAGCGTCCTGCCGTCCTCA 157265 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| |||| |||||| || |||| || | || |||||| ||| Sbjct 157266 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCGGGGGGAATGCCCTCCTTATCCTGA 157325 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | ||| | | | ||||||| || || || |||| ||||| || || Sbjct 157326 ATCTTCGCCTTCA-CGTTGTCAATCGTGTCGGAAGACTCTACCTCCAGGGTGATCGTCTT 157384 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| || || ||||| ||||| Sbjct 157385 TCCAGTGAGCGTCTTGACGAAGATCTGCAT 157414 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 || |||| ||| |||||| || || ||||| || || || ||||| | || || ||| Sbjct 157953 AGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCAGC 158012 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 |||||||| ||||| || | |||||||| || | || | | |||||| ||| ||| Sbjct 158013 TGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATC 158072 Query 46508 TTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567 ||| ||||| | | | ||||| || || || || | |||||||| ||||| Sbjct 158073 TTCGCCTTGACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGCCG 158132 Query 46568 GTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| ||||| ||||| Sbjct 158133 GTCAATGTCTTAACGAAGATCTGCAT 158158 >seq55 Length=147043 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| |||||||| |||| |||||||||||||| ||||| Sbjct 26057 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 25998 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 |||| ||||||||| |||| Sbjct 25997 GATCAGGCGCTGCTGATCGG 25978 >seq116 Length=96108 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| | || |||||||||||||||||||| Sbjct 9793 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 9852 Query 46462 TATCAAGCGCTGCTGGTC 46479 || | |||||||||||| Sbjct 9853 GATGAGGCGCTGCTGGTC 9870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565233369378240