Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq70 351 1e-91 seq52 122 9e-23 seq1 102 8e-17 seq55 86.0 6e-12 seq116 82.4 8e-11 >seq70 Length=136885 Score = 351 bits (388), Expect = 1e-91 Identities = 421/569 (74%), Gaps = 15/569 (3%) Strand=Plus/Minus Query 132880 TGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCG 132939 || ||||| | || ||| || |||||| |||| ||||| || | | ||||| ||| Sbjct 75848 TGGTTGAAGAGCAGGCACGCGAAGTCGGTGTGCATACCCTCATCACGGCTGATGAGCTCG 75789 Query 132940 TTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAA 132999 || ||| |||| |||||||||||| ||||| || |||||||| || || | ||||| Sbjct 75788 TTCGAGAACGTCAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGACGCGAAC 75729 Query 133000 CTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTG 133059 ||| || ||||||| |||||||| || ||||| || | || |||||| |||||| | Sbjct 75728 GAGCCAGAGAAGAAGATACCCTCGACCGCTGCGAAGGCAATAAGACGCTCGGCGAACGAG 75669 Query 133060 GCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATC 133119 | || ||| | |||||| || || ||||| || ||||| | |||| ||| || || Sbjct 75668 GATTTCTTGTCCGAGATCCAACGGAGGGCCCAGTCCGCCTTCTTCTTGATGCAGGGGATG 75609 Query 133120 GTTTCGATGGCGTTCAACAAACGGAGTTTCTCT---TCCGAGGAACGCACG---TAGGTG 133173 || ||||| |||| ||||| || | ||| | || || | | |||||| Sbjct 75608 GTGTCGATCGCGT----CAAAC--AGGTGCTCACGCTGCGTGGGGTCCTTGATATAGGTG 75555 Query 133174 TCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAA 133233 ||||||||| ||| ||| | || ||||| | ||||||||| ||| || |||||||| Sbjct 75554 TCGATGAGGAGCGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 75495 Query 133234 AAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTG 133293 |||||||| ||||| | ||||| ||||| | | ||| |||||||| ||||| || ||| Sbjct 75494 AAGCACCGTGCCTCAGCAACCTGTACTTCGTTGGAGAACCGCTCGACGAGATTCTCATTG 75435 Query 133294 ACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTG 133353 || ||||||||| || ||||||||||| || |||||| |||||| |||||||||| | Sbjct 75434 ACAATGCCGTCGGACGCAGCGAAAAAGGCGAGGACGTGCGAGATGAAGTGGCGCTCGTCG 75375 Query 133354 TCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTC 133410 ||||||| || | |||||| || ||||||||| ||||||| |||||| ||||| Sbjct 75374 TCGTTCAGACGGTTGTGCCAGTCATGCAGGTCCTTGGATAGGTCCATCTCCTCTGCGGTC 75315 Query 133411 CAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || ||||||||||| || || |||||||| Sbjct 75314 CAGAACGACGCCTCAGCCTTCTTGTACAT 75286 Score = 322 bits (356), Expect = 5e-83 Identities = 415/569 (73%), Gaps = 13/569 (2%) Strand=Plus/Plus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 ||| || | ||||| || || ||||||||| |||| ||||| || | | ||||| Sbjct 73186 CAAGTGTTGGAACAGCAGACATGCAAAGTCGGTGTGCATACCCTCATCGCGGCTGATGAG 73245 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 ||||| ||| |||| ||||||||| || || || || |||||||| || || | || Sbjct 73246 CTCGTTCGAGAACGTCAGGCCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATCGACGC 73305 Query 132996 GAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 ||| ||| || ||||| | ||| ||||| || ||||| || || || ||||| || Sbjct 73306 GAACGAGCCGGAGAAGAAAATGCCTTCGACCGCGGCGAACGCAACAAGCCGCTCCGTAAA 73365 Query 133056 CGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 ||| | | |||| |||||||||||||||||||| || ||||| | |||| |||||| Sbjct 73366 CGTCGACTTTTTGTCCGCGATCCAGCGCAGCGCCCAGTCCGCCTTCTTCTTGATGCACGG 73425 Query 133116 CATCGTTTCGATGGCGTTCAACAAACGGAGTTT---CTCTTCCGAGGAACGCACGTAGGT 133172 || || ||||| |||| |||| || | | | | | || | |||||| Sbjct 73426 CACGGTCTCGATCGCGTCGAACA---GGTGCTCGCGCACATGCGGCTCCTTGATGTAGGT 73482 Query 133173 GTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTA 133232 |||||||||| ||||||| | || ||||| | ||||||||| ||| || |||||||| Sbjct 73483 GTCGATGAGGAGCGAATACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTA 73542 Query 133233 AAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTT 133292 || |||||||||||| | |||||||| || | | ||| ||||||| || || ||||| Sbjct 73543 GAAACACCGCGCCTCGGCGACCTGCACCTCGTTGGAGAACCGCTCGAGGAGGTTCTCGTT 73602 Query 133293 GACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTT 133352 |||||| ||||| ||||||||||||||| || |||||| ||| |||| |||||||| Sbjct 73603 GACGATCCCGTCCGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATAAAATATCGCTCGTT 73662 Query 133353 GTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGAC--AGGTCCACCTCCTCGACG 133407 |||||||| || ||||||||| | ||| | ||| ||||| | |||||| | Sbjct 73663 GTCGTTCAGCCGGTTCTCCCAGTCCCAGAGGTCGT--GACTGAGGTCGATCTCCTCAGCT 73720 Query 133408 GTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 ||||| || || || |||||||| ||||| Sbjct 73721 GTCCAGAATGATGCTTCGGCTTTCTTGTA 73749 >seq52 Length=153599 Score = 122 bits (134), Expect = 9e-23 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | |||||||| ||||||||| |||| || ||| || | Sbjct 49497 ATGCAGATTTTCGTCAAGACGTTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCG 49556 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||| | ||||| ||||| || || ||||||| Sbjct 49557 GACACCATTGACAATGTCAAGGCCAAAATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 49616 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | |||||||| ||||| || |||| ||||| || ||||||||| Sbjct 49617 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCGGACTACAAC 49676 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGG 38451 ||||| ||||| ||| || || ||| ||| Sbjct 49677 ATCCAGAAGGAGAGC-ACCCTTCATCTGG 49704 Score = 116 bits (128), Expect = 4e-21 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| | || || ||| | || Sbjct 50061 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTCTGGAGGTTGAGTCGTCC 50120 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| || || ||||| || || ||||||| Sbjct 50121 GATACCATTGACAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCCGACCA 50179 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||||||||| ||||| || || | ||||| ||| |||||||| Sbjct 50180 GCAGCGCCTCATCTTCGCGGGCAAGCAGCTTGAAGATGGTCGCACGCTCTCAGACTACAA 50239 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| ||| || || || ||||| || ||| || | |||||| Sbjct 50240 CATCCAGAAGGAGAGC-ACCCTTCACTTGGTCCTTCGTCTGCGTGGCGGC 50288 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || || || ||| |||| || || || | Sbjct 49216 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACGATTACCCTCGAGGTGGAATCCTCG 49275 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| || || ||||||| Sbjct 49276 GACACTATAGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 49334 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||||||||| ||||| || || | ||||| || |||||||| Sbjct 49335 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCTGACTACAA 49394 Query 38423 CATCCAAAAGGA 38434 ||| || ||||| Sbjct 49395 CATTCAGAAGGA 49406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||||| | || || ||| | | Sbjct 49780 ATGCAGATTTTCGTTAAGACGCTGACCGGCAAGACGATCACTCTGGAGGTTGAGTCGTCT 49839 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || || | || || Sbjct 49840 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCGGATCAG 49899 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| ||| |||| || | || || ||| |||||||||| Sbjct 49900 CAGCGCCTCATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACTCTCTCCGACTACAAC 49959 Query 38424 ATCCAAAAGGA 38434 || || ||||| Sbjct 49960 ATTCAGAAGGA 49970 Score = 82.4 bits (90), Expect = 8e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| || ||||| ||||| ||||||| ||| || |||||||| || |||| ||||||| Sbjct 49041 TCCCACCTGACCAGCAGCGCCTCATTTTCGCTGGTAAACAGCTCGAGGACGGCCGCACCC 49100 Query 38410 TCAACGACTACAACATCCAAAAGGA 38434 | ||||||||||||||| ||||| Sbjct 49101 TTTCCGACTACAACATCCAGAAGGA 49125 >seq1 Length=721539 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| || || || |||||| | || || ||| | || Sbjct 157414 ATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACGATCACCCTGGAGGTAGAGTCTTCC 157355 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || || | || || ||||| |||||| |||| || Sbjct 157354 GACACGATTGACAACG-TGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCCCCCGATCA 157296 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||| ||||| ||||| || |||| | || || || ||||| Sbjct 157295 ACAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCAGGACGCTGTCGGATTACAA 157236 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| | || || || | || || ||| | | || |||| Sbjct 157235 CATCCAGAAGGAGTCTACACTTCACCTTGTTCTTCGTCTCCGTGGTGGCC 157186 >seq55 Length=147043 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 |||||| |||| || ||||| || || | ||| ||||| ||||| || |||| ||||| Sbjct 25971 ATTCCCCCCGATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACT 26030 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| ||||||||||||||| ||||| | || || || | ||||| || Sbjct 26031 CTCAGCGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTGCTCCG 26080 >seq116 Length=96108 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 || ||| | ||||| ||||| ||||| | ||| ||||| ||||| || || | |||||| Sbjct 9879 ATCCCCCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACC 9820 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || | ||||||||||||||| ||||| | || || || |||| || || Sbjct 9819 CTGAGCGACTACAACATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCG 9770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168348462080