Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq264 181 1e-40 seq6 156 5e-33 seq216 95.1 2e-14 seq110 84.2 3e-11 >seq264 Length=39110 Score = 181 bits (200), Expect = 1e-40 Identities = 257/357 (72%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || |||||||| | ||| || || || ||||| || ||||| || |||||||| Sbjct 28405 ATCGAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTGGCCTTGACCTCGAAGATACC 28346 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || || | | | || ||||| || ||||| ||||| || || || || || || Sbjct 28345 CTCCTCGATTGTCAGGAGTGACACATCGAAAGTACCTCCACCGAGATCGAAGATCAGGAC 28286 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| || | | ||||| |||||||||||||||||||| ||||| || || || Sbjct 28285 GTTGCGCTCACCAACGCCCTTCTTGTCGAGACCGTACGCGATAGCGGCCGCAGTGGGCTC 28226 Query 7636 ATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || || ||||| || ||| || || || ||||| ||||||| || ||||| || | Sbjct 28225 GTTGATGATACGGAGGACA-TTGAGACCGGCAATGACACCCGCATCCTTGGTCGCCTGAC 28167 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | ||||| ||||||||||| || || || || | || || | || ||| | | ||||| Sbjct 28166 GCTGCGAGTCGTTAAAGTACGCGGGCACGGTGATAACGGCTTGCGAGACGGTGTAACCGA 28107 Query 7755 GATACGATTCCGCGATATCTTTCA--TTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||||| || ||||| || || |||||| || ||||| || || ||||| || Sbjct 28106 GATACGACTCGGCGATCTCGCGCATCTTTTGG--AGGACCATGGAGGAGATCTCCTC 28052 Score = 141 bits (156), Expect = 1e-28 Identities = 271/397 (68%), Gaps = 2/397 (1%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| || | ||| ||||| || || | || ||||| ||||| ||||| || ||||| Sbjct 28911 TCACCAGTAAGGATAGCGGCCTGAACGGCAGCACCGTACGCGACAGCCTCGTCAGGGTTG 28852 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACAT-TTGTTGAATTTTCGG 7128 || | || | || || ||||| || | ||||| | | ||| || | || Sbjct 28851 ATGCTCTTGCAGGGCTCCTTGCCGTTGAAGAAGTCCGAGACGAGCTTGACGA-TACGGGG 28793 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188 ||| || ||||| |||||||| | ||||| || | || ||||| || |||||||| || Sbjct 28792 GATACGAGTCGAACCACCGACAAGGACGATCTCGTCGACCTTCGACTTGTCGATCTTGGA 28733 Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 ||| || || ||||||||||| || | | ||||| | |||| || || || Sbjct 28732 GTCGCGGAGGACCTTTTCGACAGGCTCGAGCGTGCTGCGGAAGAGGTCCTGGCAGAGCTC 28673 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||| || || |||||||| | ||| || ||||| || | || ||| | | || || || Sbjct 28672 CTCGAAGCGCGCACGGGTGAGGGAAGTGTAGAAGTCGATACCCTCGAAGAGGGAGTCGAT 28613 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 ||||||| ||||| | | || || | || ||||| || ||||| || || || || Sbjct 28612 CTCAATGGAGGTTTGGGTAGCGGAGGAAAGGGTGCGCTTGGCACGCTCGCAAGCAGTGCG 28553 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 | ||||| || ||||| ||||| ||| | |||| Sbjct 28552 CAGGCGACGGAGAGCACGAGGGTTCGAGGAGAGATCT 28516 Score = 122 bits (134), Expect = 1e-22 Identities = 140/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 ||||| | ||| || ||||||||||| || || || ||||| | ||||||||| || Sbjct 27878 AACTTGCGTCCAATGAGACGCTTTGCGTCGAAGACGGTGTTGTGGGGGTTCATCGCGACC 27819 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || || |||| ||||| || || | | | || | ||| || ||| Sbjct 27818 TGGTTCTTGGCAGCATCACCGACGAGACGCTCGTTGT---CGGAGAAGGAGACATAGGAT 27762 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || || || || |||||||| || || || || || ||||||||||||||||| Sbjct 27761 GGTGTTGTCCGGTTACCCTGGTCGTTGGCGATGATCTCGACACGGTCGTTTTGCCAGACA 27702 Query 8108 CCGACGCA 8115 ||||| || Sbjct 27701 CCGACACA 27694 >seq6 Length=395235 Score = 156 bits (172), Expect = 5e-33 Identities = 295/428 (69%), Gaps = 12/428 (3%) Strand=Plus/Minus Query 7301 GAATCAATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCAC 7358 || |||| |||| ||| || || || || | ||| | || ||||| || ||||||| Sbjct 299731 GAGTCAACCTCAACGGTGGTCTGGGTGACGCTGGAGAGA--GTGCGCTTAGCACGCTCAC 299674 Query 7359 ACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTAC 7418 |||| | || | |||||| |||||||| | | | | || || || || | | Sbjct 299673 ACGCACTGCGCAGACGACGCAGGGCACGGGCATCATCCGAGATGTCAAGGCCG-GTCTTC 299615 Query 7419 GTTTA-AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 | | ||||||| |||||| |||||| | ||||| || |||||||||||| Sbjct 299614 TTCTGGAACTCTTTCTTGAAGTGGTCAAGGAGGTTGTTGTCGAAGTCCTCACCACCCAAG 299555 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || || ||||| || || |||| ||| || | |||||| | || || Sbjct 299554 TGGGTGTCACCAGCAGTCGCCTTCACGGAGAAGACACCACCGTGAATGTTGAGCAGAGAG 299495 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597 ||||| || ||||||||||| || || || || || |||||| | || || ||| || Sbjct 299494 ACATCGAAAGTACCACCACCGAGATCGAAGATCAGGACGTTC---TTCTCCTCCTTGCTC 299438 Query 7598 TTA---TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | | || |||||||||||||| || || ||||| || || ||||| ||||| || | Sbjct 299437 TGACGGTCCAGACCGTACGCGATGGCAGCGGCCGTGGGCTCGTTAATGATACGGAGGACG 299378 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 | || |||||||| | | || || || || || | || || || ||||| ||||| Sbjct 299377 TCGAGACCAGCAATCGCACCGGCGTCCTTGGTAGCAAGACGCTGGGAGTCGTTGAAGTAC 299318 Query 7715 GCCGGGAC 7722 |||||||| Sbjct 299317 GCCGGGAC 299310 >seq216 Length=50249 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 7600 ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAG 7659 |||||||||||| |||| |||||||| || || || || || | |||||| || || Sbjct 49936 ATCGAGACCGTATGCGAGCGCCGCCGCAGTGGGCTCGTTGATGACACGAAGGACGTCGAG 49877 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGG 7719 || || || ||||||| || |||||||| ||||||| ||||| ||||| ||||| Sbjct 49876 ACCCGCGATCTGGCCCGCATCCTTGGTCGCTTGCCGTTGCGCGTCGTTGAAGTAAGCCGG 49817 Query 7720 GACCGTTACGACCGCGT 7736 || || ||||| |||| Sbjct 49816 AACGGTAACGACAGCGT 49800 >seq110 Length=98750 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/259 (68%), Gaps = 9/259 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| ||||| || || || ||| || || |||| || Sbjct 67841 TCGAAGTCCTCACCACCGAGGTGAGTATCACCGGCAGTGGCTAGTACCTCGAAGACGCCG 67900 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA---AATGAGT 7573 | |||||| | | || ||||| ||||| ||||| || || || | ||||| | Sbjct 67901 TCGTCAATGGAGAGAAGGGAGACATCGAACGTTCCACCGCCAAGATCGTAGACAATGATT 67960 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || ||| || | || ||| || |||||||||||||| || ||||| || || Sbjct 67961 ---TGCGACTCGCCGCCCTT---CTTGTCAAGACCGTACGCGATCGCGGCCGCGGTGGGC 68014 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| || | || || || || || | || || || ||||| || Sbjct 68015 TCGTTGATGATACGGAGGACTTGGAGACCGGCGATGGTACCGGCGTCCTTGGTCGCCTGA 68074 Query 7694 CGTTGCGAATCGTTAAAGT 7712 || || | ||||| |||| Sbjct 68075 CGCTGAGCGTCGTTGAAGT 68093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635127147318080