Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq109 105 8e-18 seq3 104 3e-17 seq70 95.1 2e-14 >seq109 Length=99073 Score = 105 bits (116), Expect = 8e-18 Identities = 210/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 176764 ATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACC 176823 ||| | |||||||||||| ||||| || || | | ||||| |||||||| Sbjct 39142 ATCAGCCATGATCATGAGCTTGCCATATCGGAGTTGGTTGACATCGCTGTAGTCCTTGTT 39083 Query 176824 CTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGT 176883 || || | ||||| ||||||||||| || | || ||| | ||| | | ||| Sbjct 39082 GTGCTGCAAACCCAGGATCTTCTTGATATTCTGGATCTCCTCGTTCTTCATAATCTGGTC 39023 Query 176884 GACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATC 176943 | || || || ||||| |||| |||||||| |||||||||||| ||| ||| Sbjct 39022 GTGCTTTGCGTCTCGCACATTGAGCAACTTGCCACGAAGGGGGAAGACACCGAAGTTATC 38963 Query 176944 GCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCAC 177003 ||| || || ||| ||||||||| || || || | |||||||| || || || || | Sbjct 38962 GCGGCCGACGACACCGAGACCCGCCACAGCCAGAGACTTCGCAGAGTCTCCTTCAGTGAG 38903 Query 177004 GATGAGTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGG 177063 |||||| ||||| | | || || || || || ||||| || ||| | || || Sbjct 38902 GATGAGCGTACATTCGGAAGCTTTCTTCGATCCGGCATTGTTAGCGTCAGAGAGCTTAGG 38843 Query 177064 AATACCAGTAA 177074 || ||| |||| Sbjct 38842 AAGACCCGTAA 38832 >seq3 Length=462596 Score = 104 bits (114), Expect = 3e-17 Identities = 217/319 (68%), Gaps = 7/319 (2%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||| ||||| || | |||||||| | ||| | || ||||||||||| || Sbjct 446342 AAACCGTCCATTTCGACTAGGAGCTGGTTGAGAGTGTTCTCACGTTCATCATTTCCTCCT 446401 Query 16035 ATACCACCAGCACTG----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 ||||| || || || || ||| || | ||||| || || || |||||||| || Sbjct 446402 ATACCGCC-GCGCTTGCCACGAGCCTTCCCGATAGCATCGATTTCGTCGATGAAGACAAT 446460 Query 16091 GCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 | | || || ||| | ||| | ||||| || || ||||| || || |||| Sbjct 446461 GGACGGCGCGTTCTTCTTGGCAGACG-CGAAGAGGTCGCGGACACGGGAGGAACCGACAC 446519 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | || ||||||||||| || | | | |||| || |||||| ||||| | || | Sbjct 446520 CGACGAACATCTCCACGAATTCGGAGCCGGAGACCGAGAAGAAGGGTACATTGGCCTCGC 446579 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | ||| | ||| ||||| | ||||||||| |||||||| ||| | |||| ||||| Sbjct 446580 CGGCAGTCGCTTTCGCGAGTAAAGTCTTACCGGTACCTGGAGGACCTGAAAGGATGGCAC 446639 Query 16270 CTCGTGGAATCTTGGCGCC 16288 | || |||||||| ||||| Sbjct 446640 CACGGGGAATCTTCGCGCC 446658 >seq70 Length=136885 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || ||||| || | || || || || |||||||||||||||||||| || Sbjct 75670 TCGTTCGCCGAGCGTCTTATTGCCTTCGCAGCGGTCGAGGGTATCTTCTTCTCTGGCTCG 75729 Query 102231 TTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 ||| ||| | || | |||||||||||||| ||||||||||| || || ||||| || Sbjct 75730 TTC-GCGTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTGACGTTCTCGAA 75788 Query 102290 CGAGCTTATCTCTCGTGACGAGGG 102313 |||||| ||| ||||| ||||| Sbjct 75789 CGAGCTCATCAGCCGTGATGAGGG 75812 Score = 82.4 bits (90), Expect = 9e-11 Identities = 171/251 (68%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 102085 AGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTA 102144 |||| || || || || ||| | || || || || || | ||||| ||||| ||||| Sbjct 73454 AGCACCTGTTCGACGCGATCGAGACCGTGCCGTGCATCAAGAAGAAGGCGGACTGGGCGC 73395 Query 102145 TGAAGTGGTTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGT 102201 || ||| | | | | ||||||| | ||| | ||||| || | || || || Sbjct 73394 TGCGCTGGATCGCGGACAAAAAGTCGA---CGTTTACGGAGCGGCTTGTTGCGTTCGCCG 73338 Query 102202 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGA 102260 || || || || |||||||| || || ||| ||| | || | |||||||||||||| Sbjct 73337 CGGTCGAAGGCATTTTCTTCTCCGGCTCGTTC-GCGTCGATCTTCTGGCTCAAGAAGCGT 73279 Query 102261 GGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||||| || || ||||| |||||||| ||| || || ||||| | ||| Sbjct 73278 GGTCTTATGCCCGGCCTGACGTTCTCGAACGAGCTCATCAGCCGCGATGAGGGTATGCAC 73219 Query 102321 CAAGAGTTTGC 102331 || ||||| Sbjct 73218 ACCGACTTTGC 73208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736875392640