Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq70 107 2e-18 seq3 96.9 4e-15 >seq70 Length=136885 Score = 107 bits (118), Expect = 2e-18 Identities = 188/267 (70%), Gaps = 10/267 (4%) Strand=Plus/Minus Query 117259 TTGAAGAGCTC-CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATT 117317 ||||||||| |||| | || || ||| | ||||||||| ||| || || || || Sbjct 75845 TTGAAGAGCAGGCACG-CGAAGTCGGTGTGCATACCCTCATCACGGCTGATGAGCTCGTT 75787 Query 117318 TGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATG 117376 ||||| ||||| ||||||||||| |||||||| | ||| | || | ||| ||| | Sbjct 75786 CGAGAACGTCAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGACGC-GAACG 75728 Query 117377 ACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 | || ||||||||||||||||| || || || |||| ||| ||||||||||| ||| Sbjct 75727 AGCCAGAGAAGAAGATACCCTCGACCGCTGCGAAGGCAATAAGACGCTCGGCGAACGAG- 75669 Query 117437 GAGACTTTGTGTC---AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTA 117493 || || |||| | ||| | ||||| | ||||||||||| || || || | Sbjct 75668 --GATTTCTTGTCCGAGATCCAACGGAGGGCCCAGTCCGCCTTCTTCTTGATGCAGGGGA 75611 Query 117494 CAGTTTGGATGGCTTCAAATAACTGCT 117520 || | ||| || ||||| | |||| Sbjct 75610 TGGTGTCGATCGCGTCAAACAGGTGCT 75584 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/251 (69%), Gaps = 8/251 (3%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||||||||| ||| || || || || ||||| ||||| Sbjct 73208 GCAAAGTCGGTGTGCATACCCTCATCGCGGCTGATGAGCTCGTTCGAGAACGTCAGGCCG 73267 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| ||||| |||||||| | ||| | || | ||| ||| || ||||||||||| || Sbjct 73268 GGCATAAGACCACGCTTCTTGAGCCAGAAGATCGACGC-GAACGAGCCGGAGAAGAAAAT 73326 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGT---C 117449 || || || || ||||||| ||| ||||| | || | |||||| ||| | Sbjct 73327 GCCTTCGACCGCGGCGAACGCAACAAGCCGCTCCGTAAACG---TCGACTTTTTGTCCGC 73383 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 117509 | ||| || ||||| | ||||||||||| || || || || || | ||| || || Sbjct 73384 GATCCAGCGCAGCGCCCAGTCCGCCTTCTTCTTGATGCACGGCACGGTCTCGATCGCGTC 73443 Query 117510 AAATAACTGCT 117520 || | |||| Sbjct 73444 GAACAGGTGCT 73454 >seq3 Length=462596 Score = 96.9 bits (106), Expect = 4e-15 Identities = 216/322 (67%), Gaps = 13/322 (4%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||| ||||| || | || ||||| | ||| | || ||||||||||| || Sbjct 446342 AAACCGTCCATTTCGACTAGGAGCTGGTTGAGAGTGTTCTCACGTTCATCATTTCCTCCT 446401 Query 9342 ATACCACCAGCACTG----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397 ||||| || || || || ||| || | ||||| || || || ||||||||||| Sbjct 446402 ATACCGCC-GCGCTTGCCACGAGCCTTCCCGATAGCATCGATTTCGTCGATGAAGACAAT 446460 Query 9398 ACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 | || || | || || | || | ||||| ||||| || | || || | Sbjct 446461 GGACGGCGCGTTCTTCTTGGCAGACG----CGAAGAGGTCGCGGACACGGGAGGAACCGA 446516 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 |||| || ||||||||||| || | | | |||| || |||||| ||||| | | Sbjct 446517 CACCGACGAACATCTCCACGAATTCGGAGCCGGAGACCGAGAAGAAGGGTACATTGGCCT 446576 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9573 | || ||| | ||| ||||| | ||||||||| |||||||| ||| | |||| || Sbjct 446577 CGCCGGCAGTCGCTTTCGCGAGTAAAGTCTTACCGGTACCTGGAGGACCTGAAAGGATGG 446636 Query 9574 CACCCCGTGGAATCTTGGCGCC 9595 |||| || |||||||| ||||| Sbjct 446637 CACCACGGGGAATCTTCGCGCC 446658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975549170880