Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq52 150 4e-31 seq1 145 2e-29 seq116 84.2 5e-11 seq55 84.2 5e-11 >seq52 Length=153599 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 |||||||| ||| ||| || ||||| ||||| || | ||||| | ||||| |||||| Sbjct 49421 AGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGC 49362 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || |||||||| || || || ||||| || || ||||| || ||||| || || Sbjct 49361 TGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC 49302 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||||||||| || || |||||||| |||||| || ||||||| |||||| ||| Sbjct 49301 TTGGCCTTGACGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCT 49242 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 49241 GTCAGGGTCTTGACAAAGATCTGCAT 49216 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 || ||||| ||| ||| || || || ||||| || | |||||| | || ||||||||| Sbjct 49702 AGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGAGC 49643 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || || ||||| || || || ||||| || || ||||| || ||||| |||||| Sbjct 49642 TGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATT 49583 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || |||||| || |||||||||||||| ||||| || ||||| | ||||| || Sbjct 49582 TTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCC 49523 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || ||||| | ||||| Sbjct 49522 GTCAACGTCTTGACGAAAATCTGCAT 49497 >seq1 Length=721539 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||| || ||||| || || || |||||||| | || || || || || || Sbjct 157205 AACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGACAGCGTCCTGCCGTCCTC 157264 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || ||||| || || |||||||| || || || || Sbjct 157265 AAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCGGGGGGAATGCCCTCCTTATCCTG 157324 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| ||||| ||||| ||| || || || ||||| | |||||| Sbjct 157325 AATCTTCGCCTTCACGTTGTCAATCGTGTCGGAAGACTCTACCTCCAGGGTGATCGTCTT 157384 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | || || ||||| | ||||| Sbjct 157385 TCCAGTGAGCGTCTTGACGAAGATCTGCAT 157414 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| || || || ||||| |||||||| | |||||| | ||| || || Sbjct 157434 ACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCGTCCTCC 157493 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| ||||| || || |||||||| || || || || ||| Sbjct 157494 AGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGGAATACCCTCCTTATCCTGA 157553 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || || ||||| || || || || | || | |||||| Sbjct 157554 ATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACCTCCAACGTGATCGTCTTG 157613 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || |||||||| | ||||| Sbjct 157614 CCCGTCAACGTCTTTACGAAGATCTGCAT 157642 Score = 132 bits (146), Expect = 1e-25 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || ||||| || || ||||| || || |||||||| |||| |||| || | || || || Sbjct 158178 ACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGACAAG-GTACGACCGTCCTC 158236 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||||||||| || || ||||| ||||||||||| || ||||| || Sbjct 158237 CAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTG 158296 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| || || ||||| || ||| || || || || | ||||| Sbjct 158297 AATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTCTT 158356 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 158357 GCCCGTCAGGGTCTTGACGAAGATCTGCAT 158386 Score = 116 bits (128), Expect = 8e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || ||||| ||||||| | || | || || || Sbjct 157662 ACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGACAACGTGCGACCGTCCTCA 157721 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || || || ||||| || || || ||||| ||| Sbjct 157722 AGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGA 157781 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || || ||||| || || ||||| || || | ||||| Sbjct 157782 ATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACTTCGAGCGTGATTGTCTTC 157841 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | ||||| Sbjct 157842 CCCGTGAGAGTCTTCACGAAGATCTGCAT 157870 >seq116 Length=96108 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| ||| || || | ||||| ||| Sbjct 9776 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 9835 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||||||| || |||||||| || || || ||||| || || |||| Sbjct 9836 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGC 9881 >seq55 Length=147043 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || || || ||||| ||| ||||| | || || ||| Sbjct 26074 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCGTCCTCG 26015 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAAT 195035 |||||||| || |||||||| || || || || || || ||||| Sbjct 26014 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCGGGGGGAAT 25971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109471478754104