Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq52 109 4e-19 seq1 96.9 2e-15 >seq52 Length=153599 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||||| || ||||||||||| ||||| || || | || |||| || ||||| Sbjct 49419 GTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGCTG 49360 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || || || || || || |||||||| |||| | ||||||||||| ||||| Sbjct 49359 CTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 49300 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 |||||| |||| | || || || || |||| ||| || || || || || Sbjct 49299 GGCCTTGACGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCTGT 49240 Query 34958 GAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||||||||||||| Sbjct 49239 CAGGGTCTTGACAAAGATCTGCATA 49215 Score = 102 bits (112), Expect = 5e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||||| || ||||| ||||| ||||||||||| | || | || || ||||| Sbjct 49699 TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGAGCTGC 49640 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || || ||||| || || || |||||||| |||| | ||||||||||| ||| || Sbjct 49639 TTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATTTTG 49580 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 ||||| | || | || || ||| || |||| ||| ||||| || ||||| Sbjct 49579 GCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTC 49520 Query 34959 AGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || || ||||||||| Sbjct 49519 AACGTCTTGACGAAAATCTGCATA 49496 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/214 (70%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 34773 ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| ||||| || ||||||||||| ||||| || || | || |||| || Sbjct 49989 ACCAAGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTC 49930 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||| || || ||||| || || || ||||| || | || | ||||||||||| Sbjct 49929 CAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTG 49870 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||||| || | ||||| ||| | |||||| || | || || | Sbjct 49869 GATCTTGGCCTTGAC--AT--TGTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCG 49814 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || || ||||| || || |||||||| Sbjct 49813 TCTTGCCGGTCAGCGTCTTAACGAAAATCTGCAT 49780 >seq1 Length=721539 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || | | | || | || |||||||| || ||||| || Sbjct 158196 TCCTTCTGGATATTGTAGTCGGACAAGGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAG 158255 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||||| || ||| Sbjct 158256 ATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTG 158315 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| || || || |||| || ||||| || ||||| || ||||| || Sbjct 158316 TCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTGACG 158375 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 158376 AAGATCTGCAT 158386 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || ||||| || || | | || | || || ||||| || || || || Sbjct 157680 TCCTTCTGGATATTATAATCGGACAACGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAG 157739 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| ||||||| || ||| Sbjct 157740 ATAAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTG 157799 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| || ||| || |||| || || || || ||||||||||||||||| Sbjct 157800 TCGATCGTGTCAGAGGACTCGACTTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCACG 157859 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 157860 AAGATCTGCATA 157871 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| || || ||||| | || | || |||||||| || || || || Sbjct 157451 TTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAA 157510 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || |||||||| || | || | |||||||| || ||||||| || ||| Sbjct 157511 GATAAGACGTTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACGTT 157570 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| ||| || ||| || || | || || || || ||||| | ||||| || Sbjct 157571 GTCGATCGTGTCAGAGGACTCGACCTCCAACGTGATCGTCTTGCCCGTCAACGTCTTTAC 157630 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 157631 GAAGATCTGCAT 157642 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/195 (70%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || || || | || |||| |||||||| || || || || Sbjct 157968 TCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAA 158027 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | |||||||| || ||||||| ||||| || Sbjct 158028 ATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCGCCTTGAC--AT 158085 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| ||| | ||| || |||| || ||||| || || || | ||||| Sbjct 158086 --TATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGCCGGTCAATGTCTT 158143 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 158144 AACGAAGATCTGCAT 158158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630782991936