Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq52 109 4e-19 seq1 102 6e-17 >seq52 Length=153599 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || ||||| ||||| || || ||| | || | || ||||||||| Sbjct 49982 TGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAACTGC 49923 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| || || ||||| ||||||| || | ||||||||||| ||||| Sbjct 49922 TTGCCAGCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATCTTG 49863 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || |||| ||| ||||||| || ||||| || || ||| Sbjct 49862 GCCTTGACATTGTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGCCGGTC 49803 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || ||||||||||| Sbjct 49802 AGCGTCTTAACGAAAATCTGCAT 49780 Score = 105 bits (116), Expect = 5e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 48559 CCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCA 48618 ||| ||| || |||||||| || || || ||||| || || ||| | || |||| || | Sbjct 49704 CCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGA 49645 Query 48619 ACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAA 48678 |||||| || ||||| ||||| ||||| || || | || | |||||||||||| || Sbjct 49644 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAA 49585 Query 48679 TCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTC 48738 | || || ||| | | | || || | ||||||||| | || || || || | Sbjct 49584 TTTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGC 49525 Query 48739 CCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| || || || ||||||||||| Sbjct 49524 CCGTCAACGTCTTGACGAAAATCTGCAT 49497 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || ||||| ||||| ||||| ||| | || | || || | |||| Sbjct 49418 TGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGCTGC 49359 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || || || ||||| || || | || | |||||||||||| ||||| Sbjct 49358 TTGCCCGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTG 49299 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | || || || | |||||||| | |||||||| || || ||| Sbjct 49298 GCCTTGACGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCTGTC 49239 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || ||||| |||||||| Sbjct 49238 AGGGTCTTGACAAAGATCTGCAT 49216 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || |||||||| || || || ||||| || || Sbjct 50288 GCCGCCACGCAGACGAAGGACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGA 50229 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || || | |||||| || || || || || ||||| || || | || Sbjct 50228 GAGCGTGCGACCATCTTCAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 50169 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||| || ||||| || || | | | || |||| ||| || Sbjct 50168 GATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTCAAC 50109 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| || || ||||| || || || ||||||||||| Sbjct 50108 CTCCAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 50061 >seq1 Length=721539 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| ||||||||||| ||| | || |||| |||| |||||| || || || Sbjct 157452 TCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAG 157511 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || || ||||| | |||| |||||||| || |||||| || || Sbjct 157512 ATAAGACGTTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACGTTG 157571 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| ||||||| ||| ||||| || |||||||| || ||||| Sbjct 157572 TCGATCGTGTCAGAGGACTCGACCTCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACG 157631 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 157632 AAGATCTGCAT 157642 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||| || || | | |||| || | |||||| || || || Sbjct 157223 CTCCTTCTGGATGTTGTAATCCGACAGCGTCCTGCCGTCCTCAAGCTGCTTGCCAGCGAA 157282 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||||||||| | ||||| ||||||||| || |||||| || || Sbjct 157283 GATCAGGCGCTGTTGATCGGGGGGAATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTT 157342 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||||| || ||||| ||||| || | || || || Sbjct 157343 GTCAATCGTGTCGGAAGACTCTACCTCCAGGGTGATCGTCTTTCCAGTGAGCGTCTTGAC 157402 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 157403 GAAGATCTGCAT 157414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934294413976