Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq70 291 2e-73 >seq70 Length=136885 Score = 291 bits (322), Expect = 2e-73 Identities = 602/901 (67%), Gaps = 81/901 (9%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||||||| |||| ||||| |||||||||||||| |||| | ||||||| ||||| Sbjct 76172 GTAGTCCGAGACTCGCTTCTCGAAGAAGTTTGTCTTACCCTGGAGCGAGATGAGGTCCAT 76113 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGCAGG 47959 |||| ||||||||| | | ||| |||||| || ||| ||| | | | |||||| Sbjct 76112 GAAGTCGAAGGGGTTCGTCGCGTTGTACACCTTCGGGTC--GCCAAGCGCGACAAGCAGG 76055 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT------- 48012 |||| |||||| |||||||||| | ||||||| | |||||||| || Sbjct 76054 CGATCTGCGACGAACTCGATGTACTGGCACATGAGCTTCGCATTCATGCCGATGAGTGCG 75995 Query 48013 ---------------GAGG-------------GACACGGGCAAAGCCTTTG--------- 48035 |||| |||| | ||||| || | Sbjct 75994 CACGGCAGCGCATCTGAGGTACCGCAGTTAGCGACAGGAGCAAACACTACGCGCGAGCAG 75935 Query 48036 ---------TGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACG- 48085 |||| ||||||| ||| |||| ||||| ||| | ||| ||| ||| Sbjct 75934 ACATACCGGTGAGGAACTCCTGCTCGATCTCGACGGCCTCCATGATGATCCTCTTGACGA 75875 Query 48086 ---CGGGACTCTGAGG--GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGT 48140 |||| ||||| | ||| ||||| ||| |||||| ||| || |||| Sbjct 75874 CCTCGGGG---TGAGGCCGCCGCTTG---AGGTGGTTGA---AGAGCAGGCACGCGAAGT 75824 Query 48141 CCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGA 48200 | |||||| || || || |||||||||||| |||| ||||| || || ||||||| Sbjct 75823 CGGTGTGCATACCCTCATCACGGCTGATGAGCTCGTTCGAGAACGTCAGGCCGGGCATGA 75764 Query 48201 CCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCA 48260 || | || ||||||||||| || | |||||| ||||||||||||||||| ||||| | Sbjct 75763 GACCGCGCTTCTTGAGCCAGAAGATCGACGCGAACGAGCCAGAGAAGAAGATACCCTCGA 75704 Query 48261 CTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAA 48320 | || ||||| || | || | ||| |||| || | |||||||| |||||||| | Sbjct 75703 CCGCTGCGAAGGCAATAAGACGCTCGGCGAACGAGGATTTCTTGTCCGAGATCCAACGGA 75644 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCT 48380 | |||||||| ||||||||||||||||| || || || || || || || || | || Sbjct 75643 GGGCCCAGTCCGCCTTCTTCTTGATGCAGGGGATGGTGTCGATCGCGTCAAACAGGTGCT 75584 Query 48381 TGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGT 48437 | || | |||| | |||||| |||| ||| | |||| |||| |||| Sbjct 75583 CACGCTGCGTGGGGTCCTTGATATAGGTGTCGATGAGGAGC---GAGTACGTCTCGGAGT 75527 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | | ||||| || ||||||||| ||||||||| || |||||| ||||| |||| Sbjct 75526 GGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACCGTGCCTCAGCAACCTGTACTT 75467 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 | ||||||| | ||| | |||||||||||||| || || || || ||||| || |||| Sbjct 75466 CGTTGGAGAACCGCTCGACGAGATTCTCATTGACAATGCCGTCGGACGCAGCGAAAAAGG 75407 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTA 48614 | ||||| || | ||| |||||||||| || | | ||| || |||| | || | Sbjct 75406 CGAGGACGTGCGAGATGAAGTGGCGCTCGTCGTCGTTCAGACGGTTGTGCCAGTCATGCA 75347 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACA 48674 ||| ||| ||||||| || || | |||||||| ||||| || || ||||||| Sbjct 75346 GGTCCTTGGATAGGTCCATCTCCTCTGCGGTCCAGAACGACGCCTCAGCCTTCTTGTACA 75287 Query 48675 T 48675 | Sbjct 75286 T 75286 Score = 235 bits (260), Expect = 1e-56 Identities = 408/587 (70%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 48106 GCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCT 48165 ||||| ||| |||| | || || || |||||||| |||||| || || || ||||| Sbjct 73183 GCGCAAGTG-TTGGAACAG--CAGACATGCAAAGTCGGTGTGCATACCCTCATCGCGGCT 73239 Query 48166 GATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAAT 48225 ||||||| |||| ||||| || || ||||| | || | || ||||||||||| || Sbjct 73240 GATGAGCTCGTTCGAGAACGTCAGGCCGGGCATAAGACCACGCTTCTTGAGCCAGAAGAT 73299 Query 48226 TGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTC 48285 | |||||| ||||| |||||||| ||||| || || || |||||||| |||| ||| Sbjct 73300 CGACGCGAACGAGCCGGAGAAGAAAATGCCTTCGACCGCGGCGAACGCAACAAGCCGCTC 73359 Query 48286 TCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGAT 48345 || | | || ||||| | ||||||| ||||||||||| |||||||||||||| Sbjct 73360 CGTAAACGTCGACTTTTTGTCCGCGATCCAGCGCAGCGCCCAGTCCGCCTTCTTCTTGAT 73419 Query 48346 GCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCG--TCCGCAACA 48403 ||| |||| ||||| || || ||| || | || | | ||| |||| ||| | Sbjct 73420 GCACGGCACGGTCTCGATCGCGTCGAACAGGTGCT--CGCGCACATGCGGCTCCTTGATG 73477 Query 48404 TAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGG 48460 ||||| |||| ||| | ||| |||| ||||| | ||||| || ||||||| Sbjct 73478 TAGGTGTCGATGAGGAGC---GAATACGTCTCGGAGTGGATGTTCTCCATCATGATCTGG 73534 Query 48461 AACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGA 48520 || |||||||| || ||||| |||||||| || ||||||| | ||| || || Sbjct 73535 AAGCCGTAGAAACACCGCGCCTCGGCGACCTGCACCTCGTTGGAGAACCGCTCGAGGAGG 73594 Query 48521 TTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGG 48580 ||||| ||||| ||||| || || || || || ||||| ||||| || | |||| Sbjct 73595 TTCTCGTTGACGATCCCGTCCGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATAAAATAT 73654 Query 48581 CGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 |||||||||| | | || || |||| || | ||| | | ||||| | || Sbjct 73655 CGCTCGTTGTCGTTCAGCCGGTTCTCCCAGTCCCAGAGGTCGTGACTGAGGTCGATCTCC 73714 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || | |||||||| || || ||||| ||||| | || ||| || Sbjct 73715 TCAGCTGTCCAGAATGATGCTTCGGCTTTCTTGTAGAAGCGCCAGAT 73761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931524509358080