Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq70 221 2e-52 seq37 96.9 6e-15 >seq70 Length=136885 Score = 221 bits (244), Expect = 2e-52 Identities = 443/653 (68%), Gaps = 18/653 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | || ||||||||| || ||||| || || Sbjct 75277 ATCTGGCAGATGTACAAGAAGGCTGAGGCGTCGTTCTGGACCGCAGAGGAGATGGACCTA 75336 Query 25537 GCCAAGGACATGGACGGCTGGTACGC---TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 |||||||| || | | |||| || ||| | | ||||||| || || || | Sbjct 75337 TCCAAGGACCTGCATGACTGGCACAACCGTCTGAACGACGACGAGCGCCACTTCATCTCG 75396 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || || || || || || || || || || || |||||||| |||| | Sbjct 75397 CACGTCCTCGCCTTTTTCGCTGCGTCCGACGGCATTGTCAATGAGAATCTCGTCGAGCGG 75456 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| ||| ||||| ||| | ||||| ||| |||||||| |||||||| || Sbjct 75457 TTCTCCAACGAAGTACAGGTTGCTGAGGCACGGTGCTTCTACGGCTTCCAGATCATGATG 75516 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| ||| | ||| || || || || || | ||| | Sbjct 75517 GAGAACATCCACTCCGAGACGTACTC---GCTCCTCATCGACACCTATATCAAGGACCCC 75573 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 | || | || | ||||||| || ||||| ||| ||| ||||||||| ||||||| Sbjct 75574 ACGCAGCGTGAGCACCTGTTTGACGCGATCGACACCATCCCCTGCATCAAGAAGAAGGCG 75633 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 |||||| | |||||| | ||| | |||| | |||||| || | ||| Sbjct 75634 GACTGGGCCCTCCGTTGGATCTCGGACAAGAAATCCTCGTTCGCCGAGCGTCTTATTGCC 75693 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 || || || || ||||| ||||| ||| || ||||| ||| | ||||||||||||||| Sbjct 75694 TTCGCAGCGGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCGTCGATCTTCTGGCTCAAG 75753 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||||||| ||| || || ||||||||||||||| | || |||||| Sbjct 75754 AAGCGCGGTCTCATGCCCGGCCTGACGTTCTCGAACGAGCTCATCAGCCGTGATGAGGGT 75813 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA- 26069 | |||| || || || |||||||||| || |||| ||| | | |||| Sbjct 75814 ATGCACACCGACTTCGCGTGCCTGCTCTTCA---ACCAC---CTCAAGCGGCGGCCTCAC 75867 Query 26070 --AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 ||| |||| | || ||||||| ||||| || ||||||||| ||||||| Sbjct 75868 CCCGAGGTCGTCAAGAGGATCATCATGGAGGCCGTCGAGATCGAGCAGGAGTT 75920 Score = 178 bits (196), Expect = 2e-39 Identities = 324/468 (69%), Gaps = 10/468 (2%) Strand=Plus/Minus Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633 |||||| ||||| || | |||| | || || || || ||||| || || || || | Sbjct 73661 ACGAGCGATATTTTATCTCGCACGTCCTCGCCTTTTTCGCCGCCTCGGACGGGATCGTCA 73602 Query 25634 ACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCT 25693 ||||||| || |||| | ||| ||| || |||||| || ||||| |||||||| Sbjct 73601 ACGAGAACCTCCTCGAGCGGTTCTCCAACGAGGTGCAGGTCGCCGAGGCGCGGTGTTTCT 73542 Query 25694 ACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG- 25752 |||| |||||||| || || || | ||||| ||| |||| | ||| || || Sbjct 73541 ACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACGTATTC---GCTCCTCATCG 73485 Query 25753 --ACGTACATTACAGACGTCGCC-GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 || ||||| | || | ||| | | | || | ||||| | || |||||| | | Sbjct 73484 ACACCTACATCAAGGA-GCCGCATGTGCGCGAGCACCTGTTCGACGCGATCGAGACCGTG 73426 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTAC 25868 || ||||||||| ||||||| ||||| || |||||| | | || | | | || Sbjct 73425 CCGTGCATCAAGAAGAAGGCGGACTGGGCGCTGCGCTGGATCG-CGGACAAAAAGTCGAC 73367 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| |||||||| || || || || || || || ||||| || ||| ||| ||||| Sbjct 73366 GTTTACGGAGCGGCTTGTTGCGTTCGCCGCGGTCGAAGGCATTTTCTTCTCCGGCTCGTT 73307 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 ||| | ||||||||||||||| || || |||||||| ||| || || ||||| Sbjct 73306 CGCGTCGATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGCCTGACGTTCTCGAACGA 73247 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 |||||||||| | || |||||| | |||| || ||||| || ||||| Sbjct 73246 GCTCATCAGCCGCGATGAGGGTATGCACACCGACTTTGCATGTCTGCT 73199 >seq37 Length=175141 Score = 96.9 bits (106), Expect = 6e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 222044 AAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCG 222103 ||||||||||| ||||||| || | |||||||| | | || ||||||| || Sbjct 162050 AAGAGGTCCGGAATCCACAAAGCATAGAAGAGATCACGAGCACGGACCTCCTCCTTACCA 162109 Query 222104 TTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACG 222163 | ||| || ||||| || | ||||| || | || || |||||||| || | |||| | Sbjct 162110 TGGTTCTTTCTCAGGTCGATGAACTCGAAGACATCGGCATGCCACGGTTCGATGTAGATG 162169 Query 222164 GCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || | ||| || || |||||||||||||||||||| || Sbjct 162170 GCAAAAGCTCCAGGGCGCTTGTTGCCACCCTGATCGAC 162207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928836533281280