Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq37 134 1e-26 seq1 109 5e-19 seq52 105 6e-18 >seq37 Length=175141 Score = 134 bits (148), Expect = 1e-26 Identities = 294/432 (68%), Gaps = 14/432 (3%) Strand=Plus/Plus Query 138553 GTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATG 138612 ||| | ||||| || |||||||| || || || ||| || | |||||| |||||| Sbjct 161101 GTGTACGGCTCGAAGCATTCGTTGAAGCCGAGGATTTGACTTGTCGACGCGGTGGGCATG 161160 Query 138613 TACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGA--TTCGTTCCTTGAGCGACG 138670 ||| || | ||| || ||||| |||||| | | || |||| |||| || | Sbjct 161161 GGCGCAACGAGAAGCGAGTTCCGCAAACCGGTACGAGCGACTTTCG--CCTTCAGGCTAG 161218 Query 138671 ACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAAC 138730 ||||||||| | ||| | || | || ||| | || ||||| | | ||| Sbjct 161219 TCCAGTCCCAGAGGTCGGTCGGGGTGATGCCCCAGAGGTCATACTGCAGCTCGCCCCTGG 161278 Query 138731 TTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCG 138790 || || ||||| ||||||| ||||| |||| || | ||||| ||| |||||| Sbjct 161279 AAGCAGGGCTGCCCTCGTACGTCTCGTAAGGACCATCCTTCTCCGCCATGTCGCTGCTCG 161338 Query 138791 CCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTC-G 138849 |||||| ||| ||| ||| || |||||| ||||||| |||||| || ||||| | Sbjct 161339 CCTCGACAGCAGCATGGTAGATCGTTTCGAAGATCTGCTTGTTGAGCTCGCGTGCCTCAG 161398 Query 138850 GCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACT 138909 ||| |||| | |||||||| || | |||| | |||||| || || ||||| || || Sbjct 161399 GCG-ACTCGAAGGGCATGCGCAGAGCCATGAAGGTGTCGGCAAGACCCTGCACACCGACA 161457 Query 138910 CCGACAGGGCGATGGCGCAGATTTGACGCTTTTGC-GGCTTC---GATAGGATAATAGTT 138965 |||| || ||||| |||| || || || || ||| || ||| ||||| ||||| Sbjct 161458 CCGATCGGCCGATGACGCATGTTCGA-GC---GGCGGGCCTCGGGGATGGGATAGTAGTT 161513 Query 138966 TACATCGATGAT 138977 || || ||||| Sbjct 161514 GACGTCAATGAT 161525 >seq1 Length=721539 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||| | || || || || | Sbjct 157642 ATGCAGATCTTCGTAAAGACGTTGACGGGCAAGACGATCACGTTGGAGGTCGAGTCCTCT 157583 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || || || || || || ||||| ||||| Sbjct 157582 GACACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 157523 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || || || ||||||||||| | | | | || ||||| ||| Sbjct 157522 CAACGTCTTATCTTCGCTGGCAAGCAGCTGGAGGACGGGCGCACTCTTTCTGATTACAAC 157463 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||||||||| || || | || |||| |||| |||||| Sbjct 157462 ATTCAGAAGGAATCGACTCTTCATCTCGTCCTGCGTCTGCGTGGAGGC 157415 Score = 104 bits (114), Expect = 2e-17 Identities = 153/212 (72%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || | ||||| || || || || ||||| || || | | Sbjct 158158 ATGCAGATCTTCGTTAAGACATTGACCGGCAAGACCATCACACTCGAGGTCGAGTCATCT 158099 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| || || || || || || || || ||||| Sbjct 158098 GACACAATCGATAATGTCAAGGCGAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAG 158039 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| | || || || || || |||||||||||| ||| | || |||||||||| | Sbjct 158038 CAGCGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGTCG-CACAC-TGTCAGATTACA 157981 Query 24882 ACATTCAAAAGGAATCGACACTACA-CTTGGT 24912 ||||||| ||||| || || || || |||||| Sbjct 157980 ACATTCAGAAGGAGTCTACTCTGCACCTTGGT 157949 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || || || ||||| | || Sbjct 157414 ATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACGATCACCCTGGAGGTAGAGTCTTCC 157355 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || || || || || || || ||||||||| Sbjct 157354 GACACGATTGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCCCCCGATCAA 157295 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||| ||||| || | |||| ||||| ||| Sbjct 157294 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCAGGACGCTGTCGGATTACAAC 157235 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || ||||| ||| Sbjct 157234 ATCCAGAAGGAGTCTACACTTCAC 157211 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| || ||| || | Sbjct 158386 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCT 158327 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || |||||||| || Sbjct 158326 GACACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 158267 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || ||||||||||| | | | |||| || || || Sbjct 158266 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACCTTGTCCGACTACAAT 158207 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 158206 ATCCAGAAGGAGTCTACCCTGCAC 158183 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||||||||| || || | Sbjct 157870 ATGCAGATCTTCGTGAAGACTCTCACGGGGAAGACAATCACGCTCGAAGTCGAGTCCTCT 157811 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||||||||| Sbjct 157810 GACACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGATCAG 157751 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||||| ||||| | | |||| |||||||| Sbjct 157750 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGTTGTCCGATTATAAT 157691 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 157690 ATCCAGAAGGAGTCTACCCTGCAC 157667 >seq52 Length=153599 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || ||||| ||||| || ||| || | Sbjct 49216 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACGATTACCCTCGAGGTGGAATCCTCG 49275 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||| | || || |||||||| ||||| || || || || ||||| || Sbjct 49276 GACACTATAGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 49335 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| |||||| | | |||| || || ||| Sbjct 49336 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCTGACTACAAC 49395 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 49396 ATTCAGAAGGA 49406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893595911360