Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 116 9e-21 seq52 87.8 4e-12 >seq1 Length=721539 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| |||||||| ||||| |||||||| |||| || || ||| ||| Sbjct 157411 CAGATCTTCGTCAAGACGCTCACTGGAAAGACGATCACCCTGGAGGTAGAGTCTTCCGAC 157352 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || ||| || || || Sbjct 157351 ACGATTGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCCCCCGATCAACAG 157292 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| | || || || ||||| || | ||||||||| || Sbjct 157291 CGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCAGGACGCTGTCGGATTACAACATC 157232 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| |||||||| |||||||||||| Sbjct 157231 CAGAAGGAGTCTACACTTCACCTTGTT 157205 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| | || || ||| |||||| Sbjct 158383 CAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCTGAC 158324 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || ||| || ||| || Sbjct 158323 ACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAG 158264 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| |||| || || | || ||| |||| ||||| || Sbjct 158263 CGTCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACCTTGTCCGACTACAATATC 158204 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || ||||| || Sbjct 158203 CAGAAGGAGTCTACCCTGCACCTCGT 158178 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || |||||||| ||||| || || |||||||| |||| Sbjct 157627 AAGACGTTGACGGGCAAGACGATCACGTTGGAGGTCGAGTCCTCTGACACGATCGACAAC 157568 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || ||| || || ||| | ||||||||| Sbjct 157567 GTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAGCAACGTCTTATCTTC 157508 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| || || | ||| | | ||||||||| | ||||| || || Sbjct 157507 GCTGGCAAGCAGCTGGAGGACGGGCGCACTCTTTCTGATTACAACATTCAGAAGGAATCG 157448 Query 206365 ACTCTTCACCTTGT 206378 |||||||| || || Sbjct 157447 ACTCTTCATCTCGT 157434 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || |||||||| ||||||| ||| ||||| | ||| || | || || ||| Sbjct 158178 ACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCGTCCTCC 158237 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| |||||||||||||| || || || Sbjct 158238 AGCTGCTTGCCGGCGAAGATAAGACGCTGCTG 158269 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| ||||| ||||| ||||||| || ||||| | ||| || | ||||||||| Sbjct 158406 ACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAACGTGCGGCCATCTTCC 158465 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || |||||||| || || || || Sbjct 158466 AGCTGCTTCCCCGCGAAGATCAGACGCTGCTG 158497 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 |||||||||||| |||||||| ||||||| || || || | || ||||| || || || Sbjct 157205 AACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGACAGCGTCCTGCCGTCCTC 157264 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || |||||||| || || |||||| Sbjct 157265 AAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGA 157298 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | ||||| || |||||||| |||| Sbjct 157855 AAGACTCTCACGGGGAAGACAATCACGCTCGAAGTCGAGTCCTCTGACACGATCGACAAC 157796 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || || || || || | ||||||||| Sbjct 157795 GTGAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGATCAGCAGCGCCTTATCTTC 157736 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || ||| ||||||| || ||||||| |||||| Sbjct 157735 GCTGGCAAGCAGCTTGAGGACGGTCGCACGTTGTCCGATTATAATATCCAGAAGGAGTCT 157676 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 157675 ACCCTGCACCTCGT 157662 >seq52 Length=153599 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || ||||||||| |||| || || |||||||| |||| Sbjct 49795 AAGACGCTGACCGGCAAGACGATCACTCTGGAGGTTGAGTCGTCTGACACCATCGACAAT 49854 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||| || | || ||||| Sbjct 49855 GTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCGGATCAGCAGCGCCTCATCTTT 49914 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||| ||||| | ||| | |||| |||||| | ||||| ||| Sbjct 49915 GCTGGCAAGCAGTTGGAGGATGGCCGTACTCTCTCCGACTACAACATTCAGAAGGAGAGC 49974 Query 206365 ACTCTTCACCTTG 206377 || |||||||||| Sbjct 49975 ACCCTTCACCTTG 49987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181810018839752