Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq70 248 1e-59 seq37 93.3 6e-13 seq100 91.5 2e-12 seq49 87.8 3e-11 >seq70 Length=136885 Score = 248 bits (274), Expect = 1e-59 Identities = 377/527 (72%), Gaps = 16/527 (3%) Strand=Plus/Minus Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGT 1455850 ||| || ||||| || || || ||||| || |||||| |||||||| | |||| Sbjct 73747 CAAGAAAGCCGAAGCATCATTCTGGACAGCTGAGGAGATCGACCTCAGTCACGACCTCTG 73688 Query 1455851 CCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 |||||| | ||||| |||| ||||||| |||| ||| ||||||||||||||| Sbjct 73687 GGACTGGGAGAACCGGCTGAACGACAACGAGCGATATTTTATCTCGCACGTCCTCGCCTT 73628 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 ||| ||||||| || || ||||| ||||||||| || || || || |||| Sbjct 73627 TTT-CGCCGCCTCGGACGGGATCGTCAACGAGAACCTCCTCGAGCGGTTCTCCAACGAGG 73569 Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027 | || | | ||||| || | || ||||| ||||||||| || || |||||||||| Sbjct 73568 TGCAGGTCGCCGAGGCGCGGTGTTTCTACGGCTTCCAGATCATGATGGAGAACATCCACT 73509 Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACC 1456087 | || || || |||||||| |||||||||||| ||||||| ||| | | || |||| Sbjct 73508 CCGAGACGTATTCGCTCCTCATCGACACCTACATCAAGGAGCCGCATGTGCGCGAGCACC 73449 Query 1456088 TCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGT 1456147 | || ||| ||||| || ||||||| | | ||| ||||| ||||||||| || | Sbjct 73448 TGTTCGACGCGATCGAGACCGTGCCGTGCATCAAGAAGAAGGCGGACTGGGCGCTGCGCT 73389 Query 1456148 GGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GT 1456203 ||||| |||| || ||||| ||| | |||||||| || | || ||||| || Sbjct 73388 GGATCGCGGACAAAAAG----TCGAC-GTTTACGGAGCGGCTTGTTGCGTTCGCCGCGGT 73334 Query 1456204 CGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCC 1456262 ||| ||||| || ||||| ||| ||| ||| | ||||| |||||||||||||| || | Sbjct 73333 CGAAGGCATTTTCTTCTCCGGCTCGTTC-GCGTCGATCTTCTGGCTCAAGAAGCGTGGTC 73275 Query 1456263 TCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 | |||||||| || | | | | ||||| | ||||| ||||| || Sbjct 73274 TTATGCCCGGCCTGACGTTCTCG-AACGAGCTCATCAGCCGCGATGA 73229 Score = 242 bits (268), Expect = 5e-58 Identities = 366/509 (72%), Gaps = 16/509 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| ||||| || || |||||||| |||||| | |||| Sbjct 75276 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCGTCGTTCTGGACCGCAGAGGAGATGGACC 75334 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | ||| | ||||| || |||| ||||||||||||||| |||||| Sbjct 75335 TATCCAAGGACCTGCATGACTGGCACAACCGTCTGAACGACGACGAGCGCCACTTCATCT 75394 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||||||| ||| || ||| ||||| || ||||| || | || Sbjct 75395 CGCACGTCCTCGCCTTTTT-CGCTGCGTCCGACGGCATTGTCAATGAGAATCTCGTCGAG 75453 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || || || || || | | |||||||| | || ||||| ||||||||| Sbjct 75454 CGGTTCTCCAACGAAGTACAGGTTGCTGAGGCACGGTGCTTCTACGGCTTCCAGATCATG 75513 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || || ||||||||||| ||||||||||| |||||||||| Sbjct 75514 ATGGAGAACATCCACTCCGAGACGTACTCGCTCCTCATCGACACCTATATCAAGGACCCC 75573 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 || || ||||| ||| ||| |||||||| | || | | | ||| ||||| Sbjct 75574 ACGCAGCGTGAGCACCTGTTTGACGCGATCGACACCATCCCCTGCATCAAGAAGAAGGCG 75633 Query 1456132 GACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 |||||||| | |||||| |||| || ||||| || |||||||| || Sbjct 75634 GACTGGGCCCTCCGTTGGATCTCGGACAA-GAAATCCTCG----TTCGCCGAGCGTCTTA 75688 Query 1456189 TCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGG 1456246 | | ||| || || |||||||| ||||| ||||| ||| ||| ||| | ||||| ||| Sbjct 75689 TTGCCTTCGCAGCGGTCGAGGGTATCTTCTTCTCTGGCTCGTTC-GCGTCGATCTTCTGG 75747 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||| ||||||||||| || Sbjct 75748 CTCAAGAAGCGCGGTCTCATGCCCGGCCT 75776 Score = 114 bits (126), Expect = 2e-19 Identities = 135/179 (75%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 ||||| || || |||||||||||||||||| ||||| |||||||||||||| || || | Sbjct 73048 CTGCCCGTTGCACTCATCGGCATGAACGCC-CCGCTGATGTGCCAGTACATCGAGTTC-G 72991 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 |||| |||||||| || | ||||||| || | ||||||||| | | ||||| Sbjct 72990 TCGCGGACCGCCTCCTGGTCTCGCTCGGGAACGAA-AAGCACTACAACGCCACGAACCCA 72932 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749 ||| | ||||| |||| || || ||||||||||||| || |||||| ||||| Sbjct 72931 TTCGACTTCATGGACCTGATTTCACTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGT 72873 Score = 113 bits (124), Expect = 6e-19 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 |||||||| || |||||||||||||| || | |||||||||||||||||| | | || Sbjct 75985 CGCTGCCGTGCGCACTCATCGGCATGAATGCGAA-GCTCATGTGCCAGTACATCG-AGTT 76042 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGC--TGCGGAGAAGCACTACCGGACGGCCAA 1456686 ||||| || |||||||| | ||||| ||| || || | || || |||| || Sbjct 76043 CGTCGCAGATCGCCTGCTTGTCGCGCTTGGCGACCCGAAGGTGTACAACGCGACG---AA 76099 Query 1456687 CCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCG 1456746 ||| ||| | ||||| | ||||||||| |||| ||||| ||||| |||||| || Sbjct 76100 CCCCTTCGACTTCATGGACCTCATCTCGCTCCAGGGTAAGACAAACTTCTTCGAGAAGCG 76159 Query 1456747 CGTGGC-GAGTACGCCAAGGCCGGCGTCACCGC 1456778 || | || ||| | ||||| ||||||| ||| Sbjct 76160 AGTCTCGGACTACTCGAAGGCTGGCGTCAGCGC 76192 >seq37 Length=175141 Score = 93.3 bits (102), Expect = 6e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 262420 CAACCTCAATCGTGTGATTGACATTAATCACTACCCGGTGCCCGAGGCCCGCCACTCGAA 262479 ||||||||| || | |||||| | || |||| || | ||||||||||||| |||||| Sbjct 161538 CAACCTCAACCGCATCATTGACGTCAACTACTATCCCATCCCCGAGGCCCGCCGCTCGAA 161479 Query 262480 TCTGCGCCATCGACCGATGGGCGTCGGCGTGCAGGGCCTCGCCGAC 262525 |||| ||||| ||||| || ||||| |||||||| || |||||| Sbjct 161478 CATGCGTCATCGGCCGATCGGTGTCGGTGTGCAGGGTCTTGCCGAC 161433 >seq100 Length=108983 Score = 91.5 bits (100), Expect = 2e-12 Identities = 85/107 (79%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||||||||||||||||||||| |||| | ||| ||||||||| | ||| | ||| Sbjct 20152 GTGCTCAAGCAGGTGCACCCCGATACCGGT-----ATC-TCCAACAAGGCGATGGCCATC 20205 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGC 725026 | |||||||||||||||||||| |||| ||||| | |||||||| Sbjct 20206 CTCAACTCGTTTGTCAACGACATCTTCGAGCGCATTGCGACCGAGGC 20252 >seq49 Length=155801 Score = 87.8 bits (96), Expect = 3e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || ||||| ||| |||||||||| |||| |||||||| |||||| |||||||||||| Sbjct 45328 GCGGACCTCGTCTCGTGGGGCGCGATCGGCGCGCGCACGACCGAGTCGCAGGTGCACCGC 45269 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAA 165850 ||| | |||| ||||| || |||| | |||||||| || Sbjct 45268 GAGCTCACGTCAGCGCTCTCGATGCCGGTGGGCTTCAAGAA 45228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177742526291344