Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq52 113 4e-20 >seq1 Length=721539 Score = 129 bits (142), Expect = 5e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| |||| |||||| || |||| ||||||||||| || || || Sbjct 158195 CTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCGTCCTCCAGCTGCTTGCCGGCGAA 158254 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||||| || |||||||||| ||||| ||||| || Sbjct 158255 GATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCA-CGT 158313 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| ||||| ||||| | |||||| || || ||||||| || || | Sbjct 158314 TGTCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTGA 158373 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 158374 CGAAGATCTGCAT 158386 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||| | | || ||| |||| ||||||||||| || || || Sbjct 157452 TCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAG 157511 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || ||||| || | ||||| | |||||| ||| ||||| ||||| ||| Sbjct 157512 ATAAGACGTTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTCGCCTTCA-CGTT 157570 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| || || ||||||| ||||||||| || |||||||| || || || Sbjct 157571 GTCGATCGTGTCAGAGGACTCGACCTCCAACGTGATCGTCTTGCCCGTCAACGTCTTTAC 157630 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 157631 GAAGATCTGCAT 157642 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | || || | |||| || |||||||| || || || Sbjct 157223 CTCCTTCTGGATGTTGTAATCCGACAGCGTCCTGCCGTCCTCAAGCTGCTTGCCAGCGAA 157282 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||| || || | |||| || |||||| ||| ||||| ||||| || Sbjct 157283 GATCAGGCGCTGTTGATCGGGGGGAATGCCCTCCTTATCCTGAATCTTCGCCTTCA-CGT 157341 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||||| || || ||||||| |||||||| || || || | || || | Sbjct 157342 TGTCAATCGTGTCGGAAGACTCTACCTCCAGGGTGATCGTCTTTCCAGTGAGCGTCTTGA 157401 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 157402 CGAAGATCTGCAT 157414 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| | || || || | || ||||||||||| || || || Sbjct 157967 CTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCGAA 158026 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | || | | |||||| ||| ||||| ||| | | | Sbjct 158027 AATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCGCCTTGACATT 158086 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||| | ||||| || || || ||||| || || || Sbjct 158087 ATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGCCGGTCAATGTCTTAAC 158146 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 158147 GAAGATCTGCAT 158158 >seq52 Length=153599 Score = 113 bits (124), Expect = 4e-20 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 35529 CCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCA 35588 ||| ||| | || |||||||| || |||||||| || | | || || |||| || | Sbjct 49704 CCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGA 49645 Query 35589 GCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGA 35648 ||||||| |||||||| |||| ||||||||||| | || | || |||||||||| ||| Sbjct 49644 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGA 49586 Query 35649 TCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||| | ||| | | | | | ||||| || |||||||| | ||||| || || Sbjct 49585 ATTTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTG 49526 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| || || || || |||||||| Sbjct 49525 CCCGTCAACGTCTTGACGAAAATCTGCAT 49497 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| ||||||||||| || | || || || | || || |||||||| ||| Sbjct 49412 GTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCC 49353 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || || | ||||||||||| | || | || |||||||||| |||||| ||| Sbjct 49352 GCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 49293 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | |||| | | ||||| ||||||||||| | || ||||| || || |||| || Sbjct 49292 A-CGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCTGTCAGGGT 49234 Query 35719 TTTCACAAATATCTGCAT 35736 || ||||| |||||||| Sbjct 49233 CTTGACAAAGATCTGCAT 49216 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| ||||||||||| |||| | || || | || |||| |||||| || Sbjct 49976 GTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAACTGCTTGCCA 49917 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| || | |||||||| |||| || | | |||||||||| |||||| ||| Sbjct 49916 GCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 49857 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | ||||| ||| || ||||||| |||||||| || || |||| || Sbjct 49856 ACATTGTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGCCGGTCAGCGTC 49797 Query 35720 TTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 49796 TTAACGAAAATCTGCAT 49780 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | || |||||||| || |||||||| || | | || || | || || Sbjct 50269 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGACCATCTTCA 50210 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| ||||| || || | ||||||||||| | || | || |||||| ||| | Sbjct 50209 AGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGG 50150 Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||| | |||| | | || ||| ||| || ||||||| |||||||| || Sbjct 50149 ATCTTGGCCTTGA-CGTTGTCAATGGTATCGGACGACTCAACCTCCAGAGTGATCGTCTT 50091 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || |||||||| Sbjct 50090 GCCGGTCAAGGTCTTGACGAAAATCTGCAT 50061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450789587936960