Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq70 150 2e-31 seq109 87.8 2e-12 >seq70 Length=136885 Score = 150 bits (166), Expect = 2e-31 Identities = 345/512 (67%), Gaps = 13/512 (3%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | |||||| |||||| |||||| || |||||||| ||| || ||||||||||| Sbjct 75819 GTGCATACCCTCATCACGGCTGATGAGCTCGTTCGAGAACGTCAGGCCGGGCATGAGACC 75760 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| |||| || ||||||||||||||||| ||||| || Sbjct 75759 GCGCTTCTTGAGCCAGAAGATCGACGCGAACGAGCCAGAGAAGAAGATACCCTCGACCGC 75700 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTTCAT 130203 ||||| |||| |||||||| || || || ||| || | || | ||| | Sbjct 75699 TGCGAAGGCAATAAGACGCTCGGCGAACGA---GGATTTCTTGTCCGAGATCCAACGGAG 75643 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||| | |||||| |||| ||| || |||| ||| | |||||| ||||| || | || Sbjct 75642 GGCCCAGTCCGCCTTCTTCTTGATGCAGGGGATGGTGTCGATCGCGTCAAACAGGTGCTC 75583 Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 | | || || ||||| || | || ||||| || || || ||| |||| Sbjct 75582 ACGCTGCGTGGGGTCCTTGATATAGGTGTCGATGAGGAGCGAGTACGTCTCGGAGTGGAT 75523 Query 130324 CAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 | | ||| || | ||| | ||||||| | || || || | |||||| || | Sbjct 75522 GTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCACCGTGCCTCAGCAACCTGTACTTCGT 75464 Query 130383 CTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 130441 || | || | | || ||||||| ||||| || |||||| |||| ||||| || Sbjct 75463 -TGGAGAACCGCTCGACGAGATTCTCATTGACAATGCCGTCGGACGCAGCGAAAAAGGCG 75405 Query 130442 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGA 130498 |||| | | ||||| | | || | ||||||| || | | |||||| | || Sbjct 75404 AGGACGTGCGAGATGAAGTGGCGCTCGTCGTCGTTCAGACGGTTGTGCCAGTCATGCAGG 75345 Query 130499 TCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 ||||| || || || | |||||| || ||||| Sbjct 75344 TCCTTGGATAGGTCCATCTCCTCTGCGGTCCA 75313 >seq109 Length=99073 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/316 (66%), Gaps = 10/316 (3%) Strand=Plus/Minus Query 179808 ATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCTTGATAATCCTTACC 179867 ||| | ||| ||||| ||| ||||| || || | | ||||| || ||||| Sbjct 39142 ATCAGCCATGATCATGAGCTTGCCATATCGGAGTTGGTTGACATCGCTGTAGTCCTTGTT 39083 Query 179868 TTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTT-----TGATGTGAGT 179922 || || | ||||| ||||||||||| || | || ||| | ||| | || || || Sbjct 39082 GTGCTGCAAACCCAGGATCTTCTTGATATTCTGGATCTCCTCGTTCTTCATAATCTG-GT 39024 Query 179923 TGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAG 179982 | || || ||||| ||||| |||| ||||| || ||||| |||||| || Sbjct 39023 CGTGCTTT----GCGTCTCGCACATTGAGCAACTTGCCACGAAGGGGGAAGACACCGAAG 38968 Query 179983 TGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCC 180042 | ||| || || || ||| |||||| || || || || | |||||| || || || || Sbjct 38967 TTATCGCGGCCGACGACACCGAGACCCGCCACAGCCAGAGACTTCGCAGAGTCTCCTTCA 38908 Query 180043 GTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAAC 180102 || | |||||||||||| | || || || || || ||||| ||||| | | Sbjct 38907 GTGAGGATGAGCGTACATTCGGAAGCTTTCTTCGATCCGGCATTGTTAGCGTCAGAGAGC 38848 Query 180103 TTGGGAATACCAGTAA 180118 || |||| ||| |||| Sbjct 38847 TTAGGAAGACCCGTAA 38832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429695926720