Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq109 120 4e-22 seq3 100 3e-16 seq70 95.1 1e-14 >seq109 Length=99073 Score = 120 bits (132), Expect = 4e-22 Identities = 179/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 169201 ATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACC 169260 ||| | |||||||||||| ||||| || || | | ||||| |||||||| Sbjct 39142 ATCAGCCATGATCATGAGCTTGCCATATCGGAGTTGGTTGACATCGCTGTAGTCCTTGTT 39083 Query 169261 CTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGT 169320 || || | ||||| ||||||||||| || | || ||| | ||| | | ||| Sbjct 39082 GTGCTGCAAACCCAGGATCTTCTTGATATTCTGGATCTCCTCGTTCTTCATAATCTGGTC 39023 Query 169321 GACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATC 169380 | || || || ||||| |||| |||||||| |||||||||||| ||| ||| Sbjct 39022 GTGCTTTGCGTCTCGCACATTGAGCAACTTGCCACGAAGGGGGAAGACACCGAAGTTATC 38963 Query 169381 ACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGAC 169440 || || ||||| ||||||||| || || |||| |||||| ||||| || || |||| Sbjct 38962 GCGGCCGACGACACCGAGACCCGCCACAGCCAGAGACTTCGCAGAGTCTCCTTCAGTGAG 38903 Query 169441 GATGAGCGTACATT 169454 |||||||||||||| Sbjct 38902 GATGAGCGTACATT 38889 >seq3 Length=462596 Score = 100 bits (110), Expect = 3e-16 Identities = 216/319 (68%), Gaps = 7/319 (2%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||| ||||| || | || ||||| | ||| | || ||||||||||| || Sbjct 446342 AAACCGTCCATTTCGACTAGGAGCTGGTTGAGAGTGTTCTCACGTTCATCATTTCCTCCT 446401 Query 9674 ATACCACCAGCACTG----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 ||||| || || || || ||| || | ||||| || || || |||||||| || Sbjct 446402 ATACCGCC-GCGCTTGCCACGAGCCTTCCCGATAGCATCGATTTCGTCGATGAAGACAAT 446460 Query 9730 GCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 | | || || ||| | ||| | ||||| || || ||||| || || |||| Sbjct 446461 GGACGGCGCGTTCTTCTTGGCAGACG-CGAAGAGGTCGCGGACACGGGAGGAACCGACAC 446519 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | || ||||||||||| || | | | |||| || |||||| ||||| | || | Sbjct 446520 CGACGAACATCTCCACGAATTCGGAGCCGGAGACCGAGAAGAAGGGTACATTGGCCTCGC 446579 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | ||| | ||| ||||| | ||||||||| |||||||| ||| | |||| ||||| Sbjct 446580 CGGCAGTCGCTTTCGCGAGTAAAGTCTTACCGGTACCTGGAGGACCTGAAAGGATGGCAC 446639 Query 9909 CTCGTGGAATCTTGGCGCC 9927 | || |||||||| ||||| Sbjct 446640 CACGGGGAATCTTCGCGCC 446658 >seq70 Length=136885 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||| || | || || || || |||||||||||||||||||| || Sbjct 75670 TCGTTCGCCGAGCGTCTTATTGCCTTCGCAGCGGTCGAGGGTATCTTCTTCTCTGGCTCG 75729 Query 94855 TTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 ||| ||| | || | |||||||||||||| ||||||||||| || || ||||| || Sbjct 75730 TTC-GCGTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTGACGTTCTCGAA 75788 Query 94914 CGAGCTTATCTCTCGTGACGAGGG 94937 |||||| ||| ||||| ||||| Sbjct 75789 CGAGCTCATCAGCCGTGATGAGGG 75812 Score = 86.0 bits (94), Expect = 7e-12 Identities = 172/251 (69%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 94709 AGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTA 94768 |||| || || || || ||| | || || ||||| || | ||||| ||||| ||||| Sbjct 73454 AGCACCTGTTCGACGCGATCGAGACCGTGCCGTGCATCAAGAAGAAGGCGGACTGGGCGC 73395 Query 94769 TGAAGTGGTTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGT 94825 || ||| | | | | ||||||| | ||| | ||||| || | || || || Sbjct 73394 TGCGCTGGATCGCGGACAAAAAGTCGA---CGTTTACGGAGCGGCTTGTTGCGTTCGCCG 73338 Query 94826 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGA 94884 || || || || |||||||| || || ||| ||| | || | |||||||||||||| Sbjct 73337 CGGTCGAAGGCATTTTCTTCTCCGGCTCGTTC-GCGTCGATCTTCTGGCTCAAGAAGCGT 73279 Query 94885 GGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || || ||||| |||||||| ||| || || ||||| | ||| Sbjct 73278 GGTCTTATGCCCGGCCTGACGTTCTCGAACGAGCTCATCAGCCGCGATGAGGGTATGCAC 73219 Query 94945 CAAGAGTTTGC 94955 || ||||| Sbjct 73218 ACCGACTTTGC 73208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255608978880