Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 159 1e-33 seq52 118 3e-21 >seq1 Length=721539 Score = 159 bits (176), Expect = 1e-33 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||||||||| || ||||| || ||||| || | ||| || ||||| || | Sbjct 157951 CAAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCA 158010 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||| || || ||||| ||||||||||| || || || || |||||||||| Sbjct 158011 GCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAA 158070 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || |||||||| || | ||||||| || || || ||||| | ||||| | Sbjct 158071 TCTTCGCCTTGACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGC 158130 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| | ||| || || || |||||||| Sbjct 158131 CGGTCAATGTCTTAACGAAGATCTGCAT 158158 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || ||||||||||| || || || ||||| || ||||| Sbjct 157412 CATGCCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATC 157471 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || ||||| || || || || || ||||| ||||| ||||||||||||||||| Sbjct 157472 AGAAAGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGG 157531 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || ||||||||||| || || || || || || |||| ||||| | || Sbjct 157532 AGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTC 157591 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || | ||||| || || | || ||||| || |||||||| Sbjct 157592 GACCTCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTGCAT 157642 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || || || |||||||| || || ||||||||||| Sbjct 157640 CATGCCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATC 157699 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || || || ||||| || || ||||| ||||| || || |||||||| || Sbjct 157700 GGACAACGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGG 157759 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || || || || || || |||| ||||| | || Sbjct 157760 AGGGATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTC 157819 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | |||||| || || || || || || || |||||||| Sbjct 157820 GACTTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 157870 Score = 140 bits (154), Expect = 1e-27 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | |||||||| ||||| |||||||| || || || || ||||| || Sbjct 157188 CCACCACGGAGACGAAGAACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGAC 157247 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || | || || ||||| || || ||||| ||||| || || || ||||| || ||| Sbjct 157248 AGCGTCCTGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCGGGGGGA 157307 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || ||||||||||| || || || || || ||||||| || || | || || Sbjct 157308 ATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATCGTGTCGGAAGACTCTACC 157367 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | |||||||| || || || || || || |||||||| Sbjct 157368 TCCAGGGTGATCGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCAT 157414 >seq52 Length=153599 Score = 118 bits (130), Expect = 3e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || ||| || ||||| || || || || | || || ||||| || | Sbjct 49987 CAAGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCA 49928 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || || ||||||||||| || || |||||||| || || || || || || ||||| | Sbjct 49927 ACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGA 49868 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| || || | ||||| | ||||| || || || | ||||| | Sbjct 49867 TCTTGGCCTTGACATTGTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGC 49808 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || || ||||||||||| Sbjct 49807 CGGTCAGCGTCTTAACGAAAATCTGCAT 49780 Score = 111 bits (122), Expect = 5e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| ||||| || ||| || || || || || || || | || || ||||||| Sbjct 50270 GACCAAG-TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGACCATCTT 50212 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 |||| || || || || ||||| || || ||||| || || || || || || ||||||| Sbjct 50211 CAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCT 50152 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || || || || || ||||| | ||| || | ||||| || || || | |||| Sbjct 50151 GGATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTCAACCTCCAGAGTGATCGTCT 50092 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| | || || || ||||||||||| Sbjct 50091 TGCCGGTCAAGGTCTTGACGAAAATCTGCAT 50061 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 |||||||| || ||| || || || || || || || | || || || ||||| || Sbjct 49702 AGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGAGC 49643 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || || |||||||| || || ||||| || || || || || || || ||||||||| Sbjct 49642 TGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATT 49583 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || ||||| ||||| | || || | || || || || || | ||||| || Sbjct 49582 TTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCC 49523 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || | || || || ||||||||||| Sbjct 49522 GTCAACGTCTTGACGAAAATCTGCAT 49497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515240577091736