Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq70 176 5e-39 seq37 143 3e-29 >seq70 Length=136885 Score = 176 bits (194), Expect = 5e-39 Identities = 349/509 (69%), Gaps = 12/509 (2%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGC-- 59670 || |||||| ||| |||||||| ||||| || |||||| | || ||| |||| | Sbjct 75307 TCGTTCTGGACCGCAGAGGAGATGGACCTATCCAAGGACCTGCATGACTGGCACAACCGT 75366 Query 59671 -TCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGAT 59729 | || ||||||||| || |||||| | ||||| ||||| ||||| ||| || Sbjct 75367 CTGAACGACGACGAGCGCCACTTCATCTCGCACGTCCTCGCCTTTTTCGCTGCGTCCGAC 75426 Query 59730 GGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789 || ||||| | || ||| | | | | || ||||| || || ||| |||| ||||| Sbjct 75427 GGCATTGTCAATGAGAATCTCGTCGAGCGGTTCTCCAACGAAGTACAGGTTGCTGAGGCA 75486 Query 59790 CGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTC 59849 |||| ||||||| | ||| | | ||| |||||||||||||||||||||||| Sbjct 75487 CGGTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACGTACTCGCTC 75546 Query 59850 ATGATCGATAAGTTGGTCAAGGATCC--GGAAGAGAAGGCTGGTCTGTTCCGTGCCATAG 59907 | ||||| | | ||||||| || | || | || ||||| || || | Sbjct 75547 CTCATCGACACCTATATCAAGGACCCCACGCAGCGTGAGC--ACCTGTTTGACGCGATCG 75604 Query 59908 AGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGA--TGAGTCCTG 59964 | | | ||||| ||| | || | || || || |||||| | | |||| | | | | Sbjct 75605 ACACCATCCCCTGCA-TCAAGAAGAAGGCGGACTGGGCCCTCCGTTGGATCTCGGACAAG 75663 Query 59965 -GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCT 60023 | | || || || | ||||| || || || ||| || || || |||||||||||| Sbjct 75664 AAATCCTCGTTCGCCGAGCGTCTTATTGCCTTCGCAGCGGTCGAGGGTATCTTCTTCTCT 75723 Query 60024 GGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTC 60083 ||||||||| | || ||||||||||| ||||| || |||||||| ||||||| ||| Sbjct 75724 GGCTCGTTCGCGTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTGACGTTC 75783 Query 60084 TCCAACGAGCTGATTTCCCGGGACGAGGG 60112 || |||||||| || ||| || ||||| Sbjct 75784 TCGAACGAGCTCATCAGCCGTGATGAGGG 75812 Score = 129 bits (142), Expect = 6e-25 Identities = 347/525 (66%), Gaps = 8/525 (2%) Strand=Plus/Minus Query 59595 TATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTG 59654 || |||||||| | ||||||||| | | |||||||| |||||| ||||| Sbjct 73749 TACAAGAAAGCCGAAGCATCATTCTGGACAGCTGAGGAGATCGACCTCAGTCACGACCTC 73690 Query 59655 AAGGATTGGGACAA---GCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCC 59711 ||| ||||| || ||| || || |||||| |||| ||| | ||||| ||| Sbjct 73689 TGGGACTGGGAGAACCGGCTGAACGACAACGAGCGATATTTTATCTCGCACGTCCTCGCC 73630 Query 59712 TTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGAT 59771 || ||||| || || || || || | || || | | | || ||||| || Sbjct 73629 TTTTTCGCCGCCTCGGACGGGATCGTCAACGAGAACCTCCTCGAGCGGTTCTCCAACGAG 73570 Query 59772 GTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCAC 59831 || ||| | |||||||| |||| ||||||| | ||| | | ||| |||||| Sbjct 73569 GTGCAGGTCGCCGAGGCGCGGTGTTTCTACGGCTTCCAGATCATGATGGAGAACATCCAC 73510 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT 59891 ||||||||||| |||||| | ||||| | | ||||||| ||| | | | | Sbjct 73509 TCCGAGACGTATTCGCTCCTCATCGACACCTACATCAAGGAGCCGCATGTGCGCGAGCAC 73450 Query 59892 CTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 |||||| || || ||||| || || ||| | || | || || || ||||| ||| Sbjct 73449 CTGTTCGACGCGATCGAGACCGTGCCGTGCA-TCAAGAAGAAGGCGGACTGGGCGCTGCG 73391 Query 59951 GTGGATGA--GTCCTGGAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGA 60007 ||||| | | || | | ||| | | || || | || || || || || Sbjct 73390 CTGGATCGCGGACAAAAAGTCGACGTTTACGGAGCGGCTTGTTGCGTTCGCCGCGGTCGA 73331 Query 60008 AGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCAT 60067 ||| || |||||||| ||||||||| | || ||||||||||| |||||||| || || Sbjct 73330 AGGCATTTTCTTCTCCGGCTCGTTCGCGTCGATCTTCTGGCTCAAGAAGCGTGGTCTTAT 73271 Query 60068 GCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||| ||||||| ||||| |||||||| || ||| || ||||| Sbjct 73270 GCCCGGCCTGACGTTCTCGAACGAGCTCATCAGCCGCGATGAGGG 73226 >seq37 Length=175141 Score = 143 bits (158), Expect = 3e-29 Identities = 412/627 (66%), Gaps = 14/627 (2%) Strand=Plus/Minus Query 19841 GCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATC 19900 |||||||| || ||| ||||| | || | ||||||||||||||||| || || || ||| Sbjct 161723 GCCAAGTCCAACCAGCAGAACCTGGGTACTATCAAGTCGTCCAACCTCTGCACGGAGATC 161664 Query 19901 ATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCG 19960 || ||| || |||||| ||||| ||||| || ||||| ||||| | ||| || Sbjct 161663 ATTGAGTACTCGGCGCCGGATGAGACCGCCGTATGCAATCTCGCGTCGATTGCCCTCCCC 161604 Query 19961 ACTTTCGTCAAGGCCTCCTCCTTCGACTTTGCCAAATTGT--ACGAGGTGACCCGGGTCG 20018 ||||| || || | | | | |||| ||| | | |||| || || ||||| Sbjct 161603 TCTTTCATCGAGAACGGCAAGTACAACTT--CCAGCGTCTCCACGACGTCACGAAGGTCG 161546 Query 20019 TCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCA 20078 | | || || || ||| |||| || |||| || || | | | ||| ||| Sbjct 161545 TTGCCTTCAACCTCAACCGCATCATTGACGTCAACTACTATCCCATCCCCGAGGCCCGCC 161486 Query 20079 AGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCA 20138 ||||| ||||| || |||||||||| |||| || ||||| || |||||| |||| Sbjct 161485 GCTCGAACATGCGTCATCGGCCGATCGGTGTCGGTGTGCAGGGTCTTGCCGACACCTTCA 161426 Query 20139 TGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCG 20198 || || || | | ||||| || |||| ||||||||||||||| ||||||| Sbjct 161425 TGGCTCTGCGCATGCCCTTCGAGTCGCCTGAGGCACGCGAGCTCAACAAGCAGATCTTCG 161366 Query 20199 AGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGT 20258 | | | ||||| || || || || |||| | || | |||| || || | Sbjct 161365 AAACGATCTACCATGCTGCTGTCGAGGCGAGCAGCGACATGGCGGAGAAGGATGGTCCTT 161306 Query 20259 ACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCG 20318 ||||||||| | |||| || || ||| ||| || ||| ||| | |||||| Sbjct 161305 ACGAGACGTACGAGGGCAGCCCTGCTTCCAGGGGCGAGCTGCAGTATGACCTCTGGGGCA 161246 Query 20319 TCACTGAGAATGA-GTTTTGGAGCGCCCTCAAGGTTGA--GATCAAGACCC----ACGGG 20371 |||| || || | | ||| | || || ||| | ||| | | || || Sbjct 161245 TCACCCCGACCGACCTCTGGGACTGGACT--AGCCTGAAGGCGAAAGTCGCTCGTACCGG 161188 Query 20372 CTT-CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGG 20430 || || |||||| | ||||| ||||||||||| ||||| ||||| || ||| | || Sbjct 161187 TTTGCGGAACTCGCTTCTCGTTGCGCCCATGCCCACCGCGTCGACAAGTCAAATCCTCGG 161128 Query 20431 GAACAACGAGGCTTTCGAGCCGTACAC 20457 |||||| |||||||||||||| Sbjct 161127 CTTCAACGAATGCTTCGAGCCGTACAC 161101 Score = 131 bits (144), Expect = 2e-25 Identities = 413/631 (65%), Gaps = 38/631 (6%) Strand=Plus/Plus Query 78547 GTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATG 78606 |||||||||||||| |||||| || | ||| || ||||| ||||| |||||| Sbjct 161101 GTGTACGGCTCGAAGCATTCGTTGAAGCCGAGGATTTGACTTGTCGACGCGGTGGGCATG 161160 Query 78607 GGTGCGACCAGTAGAGAATTCCGAAGACCAT-----GCGTCTTGATCTCGACCTTTAGGC 78661 || || || || || || ||||| | ||| ||| ||| ||| |||| |||| Sbjct 161161 GGCGCAACGAGAAGCGAGTTCCGCAAACCGGTACGAGCGACTT----TCG-CCTTCAGGC 161215 Query 78662 C------GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715 |||||| | || ||| | ||| ||||| | ||| || || ||| Sbjct 161216 TAGTCCAGTCCCAGAGGTCGGTCGGGGTGATGCCCCAGAGGTCATACTGCAGCTCGCCCC 161275 Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT- 78774 ||| || || |||| | |||||||||||| || |||| || || | |||| Sbjct 161276 TGGAAGCAGGGCTGCCCTCGTACGTCTCGTAAGGACCATCCTTCTCCGCCATGTCGCTGC 161335 Query 78775 --GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCG 78832 | ||||| ||| | || ||||| | | |||||||| ||||||||||||||| | Sbjct 161336 TCGCCTCGA-CAG--CAGCATGGTAGATCGTTTCGAAGATCTGCTTGTTGAGCTCGCGTG 161392 Query 78833 CCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGC 78892 ||| | | ||||| | | || || ||||||| ||||| || ||||| || | Sbjct 161393 CCTCAGGCGACTCGAAGGGCATGCGCAGAGCCATGAAGGTGTCGGCAAGACCCTGCACAC 161452 Query 78893 CGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGG---TCGGGTAAA 78949 ||| | ||||||| || || ||||||| || ||| ||||||| | || || Sbjct 161453 CGACACCGATCGGCCGATGACGCATGT---TCGAGCGGCGGGCCTCGGGGATGGGATAGT 161509 Query 78950 AGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGT--ACAA 79007 |||| || |||| |||||| ||||| | |||||| || || |||| | | Sbjct 161510 AGTTGACGTCAATGATGCGGTTGAGGTTGAAGGCAACGACCTTCGTGACGTCGTGGAGAC 161569 Query 79008 TTTGGCGAAATCAAAATGATTTCCTTT---GATGAAAGTCGGTAGGCACAGCGATGCCAG 79064 || ||| | | || || || |||||||| || ||| | ||| || || Sbjct 161570 GCTG--GAAGT---TGTACTTGCCGTTCTCGATGAAAGAGGGGAGGGCAATCGACGCGAG 161624 Query 79065 GTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGA 79124 ||||| ||||| ||||| ||||| || ||| ||||| || ||||| | || || Sbjct 161625 ATTGCATACGGCGGTCTCATCCGGCGCCGAGTACTCAATGATCTCCGTGCAGAGGTTGGA 161684 Query 79125 CGACTTGATGGTGCCGATGTTCTTCTGGTTG 79155 ||||||||| || || | ||||| ||||||| Sbjct 161685 CGACTTGATAGTACCCAGGTTCTGCTGGTTG 161715 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 79684 GCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGG 79743 ||||| | ||||| || |||||||| || || || |||||||| ||||| |||||| Sbjct 162398 GCGCAGTTTTTGAGAGTATCGTAGATACCTTCAATAGAGTCGTCTTTCATGCAAACCAGG 162457 Query 79744 AAGCA---GCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCG 79800 ||||| ||| | ||| |||| || ||||| |||||||| || |||| ||| Sbjct 162458 AAGCATGAGCTG---AGCTGAGGGTGAGGTGTGCCGGCATTGAAGAGAGTTGGCGAGGCG 162514 Query 79801 TGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCG 79860 ||||||||||| | | ||| || | ||||||||| || ||| |||||| | Sbjct 162515 TGCGTGAAGAATCGCTCGGACATGAGGTTGTACGTCTCAAGCACACGCTCGAGGTCCGAG 162574 Query 79861 CCGTGGATGCCGACCGCGACGCGCATGA 79888 ||||| |||||||| ||||| ||||||| Sbjct 162575 CCGTGAATGCCGACAGCGACACGCATGA 162602 Score = 111 bits (122), Expect = 2e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 19394 GGGACGAACGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGC 19452 || |||||||| || ||| ||| || ||||| |||||||| | | | || || || Sbjct 162273 GGCACGAACGGC-TACTCGAACGGCATTGTCCCTATGCTCCGTGCGTACGACGCAACTGC 162215 Query 19453 CAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCC 19512 | |||||| | ||||| ||| ||| ||| || | || ||||||||| |||| || Sbjct 162214 TCGATACGTCGATCAGGGTGGCAACAAGCGCCCTGGAGCTTTTGCCATCTACATCGAACC 162155 Query 19513 ATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGAT 19572 ||||| || || ||| | || ||| |||| ||| | |||||| ||| | |||||| | Sbjct 162154 GTGGCATGCCGATGTCTTCGAGTTCATCGACCTGAGAAAGAACCATGGTAAGGAGGAGGT 162095 Query 19573 GCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATT 19617 || ||| || |||||| || ||||||||||||||||| || Sbjct 162094 CCGTGCTCGTGATCTCTTCTATGCTTTGTGGATTCCGGACCTCTT 162050 Score = 109 bits (120), Expect = 6e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 ||||||||||| ||||||| || |||||| || || ||| | |||||| | || Sbjct 162050 AAGAGGTCCGGAATCCACAAAGCATAGAAGAGATCACGAGCACGGACCTCCTCCTTACCA 162109 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 |||||| | ||| |||| || || | || ||||| |||||||| || | |||||| Sbjct 162110 TGGTTCTTTCTCAGGTCGATGAACTCGAAGACATCGGCATGCCACGGTTCGATGTAGATG 162169 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 || || | || ||||||| ||| ||||| | |||||| || || || || | | Sbjct 162170 GCAAAAGCTCCAGGGCGCTTGTTGCCACCCTGATCGACGTATCGAGCAGTTGCGTCGTAC 162229 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCG 79611 | |||||||| || || ||||||| | | ||||||||| ||| Sbjct 162230 GCACGGAGCATAGGGACAATGCCGTTCGAGTAGCCGTTCGTGCCG 162274 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175 ||||||| ||||| |||||||| || ||| |||||| ||| || | ||||| ||| Sbjct 162602 TCATGCGTGTCGCTGTCGGCATTCACGGCTCGGACCTCGAGCGTGTGCTTGAGACGTACA 162543 Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235 |||| ||| | || |||||||||||||| |||| || || ||||| ||||| || Sbjct 162542 ACCTCATGTCCGAGCGATTCTTCACGCACGCCTCGCCAACTCTCTTCAATGCCGGCACAC 162483 Query 19236 ACAACCCGCAGATGTCGAGC---TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGG 19292 |||| ||| | ||| || ||||| || ||||| || ||| ||||| | Sbjct 162482 CTCACCCTCAGCT---CAGCTCATGCTTCCTGGTTTGCATGAAAGACGACTCTATTGAAG 162426 Query 19293 GCATCTACGAGACGCTCAAGGAGTGCGC 19320 | |||||||| || ||||| | ||||| Sbjct 162425 GTATCTACGATACTCTCAAAAACTGCGC 162398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548519918129280