Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq70 150 2e-31 seq37 105 7e-18 seq35 93.3 5e-14 seq109 86.0 7e-12 >seq70 Length=136885 Score = 150 bits (166), Expect = 2e-31 Identities = 358/532 (67%), Gaps = 18/532 (3%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||| | ||| || | || ||||| |||| ||||| ||||| || || |||||| Sbjct 75812 CCCTCATCACGGCTGATGAGCTCGTTCGAGAACGTCAGGCCGGGCATGAGACCGCGCTTC 75753 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| ||||| | ||| || ||| ||||||||| || ||||| || ||| Sbjct 75752 TTGAGCCAGAAGATCGACGCGAACGAGCCAGAGAAGAAGATACCCTCGACCGCTGCGAAG 75693 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCATTC 74944 || | ||| || | ||||||| | || ||| |||||| | ||||| || Sbjct 75692 GCAATAAGACGCTCGGCGAACGAGG-ATTTCTTGTCCGAGATCCAACGGAGGGCCCAGTC 75634 Query 74945 AGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTT 75003 || || |||| |||||| | || |||||||| | || ||| ||| | || Sbjct 75633 CGCCTTCTTCTTGAT-GCAGGGGATGGTGTCGATCGCGTCAAACAGG--TGCTCACGCTG 75577 Query 75004 CG--GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061 || || ||||||| |||| || | || ||||||||||| || || || ||| Sbjct 75576 CGTGGGGTCCTTGATATAGGTGTCGATGAGGAGCGAGTACGTCTCGGAGTGGATGTTCTC 75517 Query 75062 GTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAA 75121 | | |||| | ||||||| |||| ||||| |||| |||||| || || || || Sbjct 75516 CATCATGATCTGGAAGCCGTAGAAGCACCGTGCCTCAGCAACCTGTACTTCGTTGGAGAA 75457 Query 75122 ATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCAT 75181 | | ||| |||||| |||| |||||||| || || |||||||| || || || Sbjct 75456 CCGCTCGACGAGATTCTCATTGACAATGCCGTCGGACGCAGCGAAAAAGGCGAGGACGTG 75397 Query 75182 TTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGC 75238 ||| ||||||||||| ||||| | | | |||| ||| || | ||||||| | Sbjct 75396 CGAGATGAAGTGGCGCTCGTCGTCGTTCAGACGGTTGTGCCAGTCATGCAGGTCCTTGGA 75337 Query 75239 CAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATCGCCTTTTTGTACA 75288 | || |||||||| | |||||||| || || | ||||| ||||||| Sbjct 75336 TAGGTCCATCTCCTCTGCGGTCCAGAACGACGCCTCA--GCCTTCTTGTACA 75287 >seq37 Length=175141 Score = 105 bits (116), Expect = 7e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || ||||||||| | | | || || || ||||||||||| | | | || || || Sbjct 162273 GGCACGAACGGCTACTCGAACGGCATTGTCCCTATGCTCCGTGCGTACGACGCAACTGCT 162214 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || |||||| | |||||||| |||||| || | || ||||||||| |||| ||| Sbjct 162213 CGATACGTCGATCAGGGTGGCAACAAGCGCCCTGGAGCTTTTGCCATCTACATCGAACCG 162154 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||| ||||| | | ||||| |||| ||| | ||| || ||| | || ||| | Sbjct 162153 TGGCATGCCGATGTCTTCGAGTTCATCGACCTGAGAAAGAACCATGGTAAGGAGGAGGTC 162094 Query 53651 CGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTT 53694 || ||| ||||| || || ||| ||||||||||||||||||| Sbjct 162093 CG-TGCTCGTGATCTCTTCTATGCTTTGTGGATTCCGGACCTCTT 162050 Score = 100 bits (110), Expect = 3e-16 Identities = 168/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | || || ||||| ||| | |||||| | |||||||||| Sbjct 162602 TCATGCGTGTCGCTGTCGGCATTCACGGCTCGGACCTCGAGCGTGTGCTTGAGACGTACA 162543 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | | ||| ||||||||| ||||||| || ||||| || || || Sbjct 162542 ACCTCATGTCCGAGCGATTCTTCACGCACGCCTCGCCAACTCTCTTCAATGCCGGCACAC 162483 Query 53313 ATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 |||||||||| | |||| |||||||||| ||||| || ||||| || || | Sbjct 162482 CTCACCCTCAGCTC---AGCTCATGCTTCCTGGTTTGCATGAAAGACGACTCTATTGAAG 162426 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | |||||||| || ||||| | || ||| ||| |||| | || ||||| ||| Sbjct 162425 GTATCTACGATACTCTCAAAAACTGCGCCATGATCAGCAAGACTGCTGGCGGTATTGGTC 162366 Query 53430 TC 53431 || Sbjct 162365 TC 162364 >seq35 Length=182428 Score = 93.3 bits (102), Expect = 5e-14 Identities = 217/326 (67%), Gaps = 10/326 (3%) Strand=Plus/Minus Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 ||||||||||||||| ||||| | ||||| ||||||| |||| |||||||||||| Sbjct 135822 CTCGTGGTTGAACAGGATGCCGTTGCACGCGTACATCCCATACGCCTCGCGGTAGTTGAC 135763 Query 124772 CGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 ||| |||||| || || | ||||| | || || || || || |||||||| || || Sbjct 135762 CGTGATCCAAAACGCATACAGCTTCGCGACACCGTACGGCGAGCGCGGGTAGAACGGCGT 135703 Query 124832 GTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATA 124891 | || | || | | | | ||| || ||| |||||| || |||||||| Sbjct 135702 CGTCTCGCTCTGCGGCGTCTCGACGACCTTGCCGTACAGCTCCGACGTCGATGCCTGATA 135643 Query 124892 GA-----ATTTGAATTTTGAAATAGAATTCGTTTGACGAATTGCCTCCAAGATCCGAAGG 124946 || | || | | | | | ||| || || || |||| | ||| || Sbjct 135642 GAACCGCACATGCTTCTCCAGCCCGCA--CGT---CCGGATCGCGTCCAGCAGCCGCAGC 135588 Query 124947 GTTCCCATGGCGTCCACATTGGCGGTATACTCGGGCTGATCAAAAGACAGTTTCACATGG 125006 || |||| ||||| || | | | || ||||||| | || || || | ||||| || Sbjct 135587 GTGCCCAGCGCGTCGACGTCGCCCGTGTACTCGGCCATGTCGAACGAGACCTTCACGTGC 135528 Query 125007 GACTGGGCACCTAGGTTGTACACCTC 125032 ||||| || || |||||||||||||| Sbjct 135527 GACTGCGCGCCGAGGTTGTACACCTC 135502 >seq109 Length=99073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| ||||| ||||| | ||||| || |||||||| | || ||| ||||| | Sbjct 37970 GTTGGCGAGCTTCGCACCAAAACCGTTACGTCCACCGGTGAGCTTCTTCTCGTCGTCATC 37911 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 |||||| ||| || || |||||| || ||||||||||||||||| Sbjct 37910 GTAGTTAGAGGAGGACAGAAGGTGGCCGAAGATGAGCTCGGGGAT 37866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211129777600