Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 170 2e-37 seq52 152 6e-32 seq35 120 3e-22 seq37 116 4e-21 seq70 86.0 7e-12 seq109 84.2 2e-11 >seq1 Length=721539 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| || || | Sbjct 158386 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCT 158327 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||||||||||||||| |||||||| |||||| Sbjct 158326 GACACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 158267 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||| | ||||||| | | ||||| ||| Sbjct 158266 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACCTTGTCCGACTACAAT 158207 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | ||||| || || || Sbjct 158206 ATCCAGAAGGAGTCTACCCTGCACCTCGTCCTTCGTCTCCGTGGCGG 158160 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || |||||||| || || | ||||| ||||| | Sbjct 157642 ATGCAGATCTTCGTAAAGACGTTGACGGGCAAGACGATCACGTTGGAGGTCGAGTCCTCT 157583 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || |||||||| |||||||| |||||||| || ||| Sbjct 157582 GACACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 157523 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| ||||| || ||||| | || || || | || || || Sbjct 157522 CAACGTCTTATCTTCGCTGGCAAGCAGCTGGAGGACGGGCGCACTCTTTCTGATTACAAC 157463 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| ||||||||||| ||| ||||||| || || || Sbjct 157462 ATTCAGAAGGAATCGACTCTTCATCTCGTCCTGCGTCTGCGTGGAGG 157416 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||||||||| || || || ||||| |||||| | Sbjct 158158 ATGCAGATCTTCGTTAAGACATTGACCGGCAAGACCATCACACTCGAGGTCGAGTCATCT 158099 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || |||||||| |||||||| || || || || ||| Sbjct 158098 GACACAATCGATAATGTCAAGGCGAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAG 158039 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||| ||||| || ||||||| ||| || || |||| || || Sbjct 158038 CAGCGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACACTGTCAGATTACAAC 157979 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| || ||||| || || Sbjct 157978 ATTCAGAAGGAGTCTACTCTGCACCT 157953 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || || || ||||| | Sbjct 157870 ATGCAGATCTTCGTGAAGACTCTCACGGGGAAGACAATCACGCTCGAAGTCGAGTCCTCT 157811 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||||||||||||||| || ||||| || ||| Sbjct 157810 GACACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGATCAG 157751 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||| | ||| || | | || |||||| Sbjct 157750 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGTTGTCCGATTATAAT 157691 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | ||||| || || || Sbjct 157690 ATCCAGAAGGAGTCTACCCTGCACCTCGTCCTTCGTCTCCGTGGCGG 157644 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| || || ||||| || || || ||||| ||||| Sbjct 157414 ATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACGATCACCCTGGAGGTAGAGTCTTCC 157355 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||||| || |||||||| |||||||| ||||| || || || Sbjct 157354 GACACGATTGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCCCCCGATCAA 157295 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||| | | || || | || || || Sbjct 157294 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCAGGACGCTGTCGGATTACAAC 157235 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || | ||||| || ||||| Sbjct 157234 ATCCAGAAGGAGTCTACACTTCACCTTGTTCTTCGTCTCCGTGGTGG 157188 >seq52 Length=153599 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| | ||||||||||| || ||||| ||||||||||| Sbjct 50061 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTCTGGAGGTTGAGTCGTCC 50120 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||||| || || ||||| |||||||| || || || |||||| Sbjct 50121 GATACCATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCCGACCAG 50180 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || || |||| ||| || || ||||||| || Sbjct 50181 CAGCGCCTCATCTTCGCGGGCAAGCAGCTTGAAGATGGTCGCACGCTCTCAGACTACAAC 50240 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| ||||| | ||| | ||||| || || || Sbjct 50241 ATCCAGAAGGAGAGCACCCTTCACTTGGTCCTTCGTCTGCGTGGCGG 50287 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||||||| | || |||||||| || || || ||||| ||||| Sbjct 49497 ATGCAGATTTTCGTCAAGACGTTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCG 49556 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| |||||||||||||||||||| || || || |||||| Sbjct 49557 GACACCATTGACAATGTCAAGGCCAAAATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 49616 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| ||||| || | || || || | ||||| || Sbjct 49617 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCGGACTACAAC 49676 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| ||| |||||||| Sbjct 49677 ATCCAGAAGGAGAGCACCCTTCATCT 49702 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||||| ||||||||||| || ||||| ||||||||||| | Sbjct 49780 ATGCAGATTTTCGTTAAGACGCTGACCGGCAAGACGATCACTCTGGAGGTTGAGTCGTCT 49839 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| || || || || ||| Sbjct 49840 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCGGATCAG 49899 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| | ||||||| ||||| || | ||||| || Sbjct 49900 CAGCGCCTCATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACTCTCTCCGACTACAAC 49959 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| ||| ||||| || Sbjct 49960 ATTCAGAAGGAGAGCACCCTTCACCT 49985 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| ||||| || ||||| || || Sbjct 49216 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACGATTACCCTCGAGGTGGAATCCTCG 49275 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 49276 GACACTATAGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 49335 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| |||||||||| || || || | ||||| || Sbjct 49336 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCTGACTACAAC 49395 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| ||| ||||| || Sbjct 49396 ATTCAGAAGGAGAGCACCCTTCACCT 49421 >seq35 Length=182428 Score = 120 bits (132), Expect = 3e-22 Identities = 216/321 (67%), Gaps = 0/321 (0%) Strand=Plus/Plus Query 24585 GAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTAC 24644 ||||| || ||||| || || ||||| ||||| ||| | ||||| ||| |||||||| Sbjct 135502 GAGGTGTACAACCTCGGCGCGCAGTCGCACGTGAAGGTCTCGTTCGACATGGCCGAGTAC 135561 Query 24645 ACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNNN 24704 |||| | |||| || || || ||||| || | | || || || || || Sbjct 135562 ACGGGCGACGTCGACGCGCTGGGCACGCTGCGGCTGCTGGACGCGATCCGGACGTGCGGG 135621 Query 24705 NNNNNNTTGAAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCAG 24764 | | | | || |||||||| ||| ||| ||| |||||||| Sbjct 135622 CTGGAGAAGCATGTGCGGTTCTATCAGGCATCGACGTCGGAGCTGTACGGCAAGGTCGTC 135681 Query 24765 GAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAG 24824 |||||||| ||| ||||| || || || || ||||| ||||| || ||| | ||| Sbjct 135682 GAGACGCCGCAGAGCGAGACGACGCCGTTCTACCCGCGCTCGCCGTACGGTGTCGCGAAG 135741 Query 24825 GTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAAC 24884 ||| |||| ||||| || |||||||| ||||| ||||||| || || |||||| Sbjct 135742 CTGTATGCGTTTTGGATCACGGTCAACTACCGCGAGGCGTATGGGATGTACGCGTGCAAC 135801 Query 24885 GGAATTCTGTTCAACCATGAG 24905 || || ||||||||||| ||| Sbjct 135802 GGCATCCTGTTCAACCACGAG 135822 >seq37 Length=175141 Score = 116 bits (128), Expect = 4e-21 Identities = 299/448 (67%), Gaps = 13/448 (3%) Strand=Plus/Plus Query 80581 CCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACA---CGACTCCATAAGG 80637 ||| || |||||||||| || || ||| ||| |||| || | || ||| | | Sbjct 161290 CCCTCGTACGTCTCGTAAGGACCATCCTTCTCCGCCATGTCGCTGCTCGCCTCGACA--- 161346 Query 80638 GCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCG 80697 || || || || || || |||| |||||| | |||| |||| || ||| Sbjct 161347 GCAGCATGGTAGATCGTTTCGAAGATCTGCTTGTTGAGCTCGCGTGCCTCAGGCGACTCG 161406 Query 80698 AACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGG 80757 || | || || || |||||| ||| || || ||||| || |||| ||||||| Sbjct 161407 AAGGGCATGCGCAGAGCCATGAAGGTGTCGGCAAGACCCTGCACACCGACACCGATCGGC 161466 Query 80758 CGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACG 80817 || || ||| ||||||| || |||||| || || || || |||| || |||| | Sbjct 161467 CGATGACGCATGTTCGAGCGGCGGGCCTCGGGGATGGGATAGTAGTTGACGTCAATGATG 161526 Query 80818 CGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA-TTG 80876 ||||| |||||| | ||| ||| || || || || || ||| |||| | | ||| Sbjct 161527 CGGTTGAGGTTGAAGGCAACGACCTTCGTGACGTCGTGGAGACGCTGGAAGTTGTACTTG 161586 Query 80877 --GTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCT 80934 |||| | | | | | | ||| ||| | ||||| |||||||| ||||| ||| Sbjct 161587 CCGTTCTCGATGAAAGAGG--GGAGGGCA-ATCGACGCGAGATTGCATACGGCGGTCTCA 161643 Query 80935 TCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGG 80994 || | | | |||| | ||| |||||||| | || || ||||| || ||||||||| Sbjct 161644 TCCGGCGCCGAGTACTCAATGATCTCCGTGCAGAGGTTGGACGACTTGATAGTACCCAGG 161703 Query 80995 TTTTTCTGGTTTGACTTGGC-GTTGCAA 81021 || | |||||| |||||||| || |||| Sbjct 161704 TTCTGCTGGTTGGACTTGGCTGTAGCAA 161731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 ||||| || |||||||||||||| |||||||||||||||||||||||||| | |||||| Sbjct 160686 CGCGTGCGGAGATAGTACATGCCGGTCTTGAGGCCCTTCTTCCAGCCGTAGAAGTGCAT 160744 >seq70 Length=136885 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 64701 GTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGG 64760 |||| ||||| |||| || | || || ||| || ||||| |||||||| || || Sbjct 73372 GTCGACGTTTACGGAGCGGCTTGTTGCGTTCGCCGCGGTCGAAGGCATTTTCTTCTCCGG 73313 Query 64761 GTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTC 64820 || ||| || || |||||||| || ||||| || || ||||| || ||| |||| || Sbjct 73312 CTCGTTCGCGTCGATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGCCTGACGTTCTC 73253 Query 64821 GAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 ||||||||| ||| || || ||||| | ||| || ||||| Sbjct 73252 GAACGAGCTCATCAGCCGCGATGAGGGTATGCACACCGACTTTGC 73208 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 || || || || ||||| ||||| || ||| || || |||||||| || ||||| || Sbjct 75703 GTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCGTCGATCTTCTGGCTCAAGAAGCGCGGT 75762 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 || ||||| || ||| |||| ||||||||||| ||| || || ||||| | ||| Sbjct 75763 CTCATGCCCGGCCTGACGTTCTCGAACGAGCTCATCAGCCGTGATGAGGGTATGCACACC 75822 Query 64858 GAATTTGCGGTTACC--CTGTTCAGCCACCTCAAG 64890 || || ||| | || || |||| |||||||||| Sbjct 75823 GACTTCGCG--TGCCTGCTCTTCAACCACCTCAAG 75855 >seq109 Length=99073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 30328 GGAATTCCCATTAAGAAACACCCTACCGAAAAAATCTGGATCCCCGAACTCATTTTTGGG 30387 || |||||||| ||| ||| | | || || |||| |||||||| ||||| || || Sbjct 37827 GGTATTCCCATCGAGATGCACTCCAAGGAGAAGATCTACATCCCCGAGCTCATCTTCGGC 37886 Query 30388 CACCTTTTGACAAGCTCCAACTACAACGACGAGGAGCAGCGCGTGACGGGTGGACGAAAT 30447 |||||| || | ||| |||||| | ||||| ||| || | || |||||||| || Sbjct 37887 CACCTTCTGTCCTCCTCTAACTACGATGACGACGAGAAGAAGCTCACCGGTGGACGTAAC 37946 Query 30448 GGCTACGGTGCAAAGCTCGCCAAC 30471 || | ||||| |||||||||||| Sbjct 37947 GGTTTTGGTGCGAAGCTCGCCAAC 37970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305324237440