Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq52 107 2e-18 >seq1 Length=721539 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || ||| | || || || || || || | || Sbjct 157415 CATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACGATCACCCTGGAGGTAGAGTCTTC 157356 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| ||||||| | || || || ||||| || || || ||||| || |||||||| Sbjct 157355 CGACACGATTGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCCCCCGATCA 157296 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | || ||| | ||| | || |||||||| Sbjct 157295 ACAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCAGGACGCTGTCGGATTACAA 157236 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATA 27218 ||| || |||||||| || | || | ||| | ||| | || |||||| || Sbjct 157235 CATCCAGAAGGAGTCTACACTTCACCTTGTTCTTCGTCTCCGTGGTGGCCTA 157184 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || ||||| || |||| |||||| | || || | || || || | Sbjct 157646 CGGCATGCAGATCTTCGTAAAGACGTTGACGGGCAAGACGATCACGTTGGAGGTCGAGTC 157587 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| |||| || | || || || ||||| || || || || || || || || Sbjct 157586 CTCTGACACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGA 157527 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||| || ||| | || | ||| ||||| || |||| ||| | || |||| ||||| Sbjct 157526 TCAGCAACGTCTTATCTTCGCTGGCAAGCAGCTGGAGGACGGGCGCACTCTTTCTGATTA 157467 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| ||||| ||||| | ||| | || ||||| |||| || ||||| Sbjct 157466 CAACATTCAGAAGGAATCGACTCTTCATCTCGTCCTGCGTCTGCGTGGAGGCAT 157413 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || ||||||||||| | || || || || || || | Sbjct 158162 CGGCATGCAGATCTTCGTTAAGACATTGACCGGCAAGACCATCACACTCGAGGTCGAGTC 158103 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | || || | ||||| || ||||| || || || || || || || || Sbjct 158102 ATCTGACACAATCGATAATGTCAAGGCGAAGATTCAGGATAAGGAGGGTATCCCCCCTGA 158043 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||| |||||| | || | ||| ||||| || |||| || || || | || ||||| Sbjct 158042 TCAGCAGCGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACACTGTCAGATTA 157983 Query 27164 CAACATTCAAAAGGAGTCGAC 27184 ||||||||| |||||||| || Sbjct 157982 CAACATTCAGAAGGAGTCTAC 157962 >seq52 Length=153599 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||||||||| | || ||||| || || || |||| Sbjct 50060 CATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTCTGGAGGTTGAGTCGTC 50119 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || || || || || || ||||| || ||||| || Sbjct 50120 CGATACCATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCCGACCA 50179 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || | ||||| || || | || || ||||| Sbjct 50180 GCAGCGCCTCATCTTCGCGGGCAAGCAGCTTGAAGATGGTCGCACGCTCTCAGACTACAA 50239 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || |||||| ||| | || ||||| | ||| |||| || ||| Sbjct 50240 CATCCAGAAGGAGAGCACCCTTCACTTGGTCCTTCGTCTGCGTGGCGGC 50288 Score = 105 bits (116), Expect = 6e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || ||||| || || || |||| Sbjct 49779 CATGCAGATTTTCGTTAAGACGCTGACCGGCAAGACGATCACTCTGGAGGTTGAGTCGTC 49838 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || ||||| || || || ||||| ||||| Sbjct 49839 TGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCGGATCA 49898 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| || ||||| || | || | ||||| ||||| Sbjct 49899 GCAGCGCCTCATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACTCTCTCCGACTACAA 49958 Query 27167 CATTCAAAAGGAG 27179 |||||| |||||| Sbjct 49959 CATTCAGAAGGAG 49971 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | ||||| || || |||||| | || Sbjct 49216 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACGATTACCCTCGAGGTGGAATCCTCG 49275 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || ||||| || ||||| || Sbjct 49276 GACACTATAGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 49335 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || || | || | || || |||||| Sbjct 49336 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCTGACTACAAC 49395 Query 27168 ATTCAAAAGGAG 27179 ||||| |||||| Sbjct 49396 ATTCAGAAGGAG 49407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914529226240