Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq52 100 2e-16 seq1 93.3 4e-14 >seq52 Length=153599 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136 ||| ||| || |||||||| || || || || || || | ||| || || |||| || | Sbjct 49704 CCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGA 49645 Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGA 39196 |||| ||||||||||| || || ||||||||||||| || | || ||| |||||| | Sbjct 49644 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAA 49585 Query 39197 TTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTC 39256 |||| |||| | | | || || |||||||| || | ||||| | || | Sbjct 49584 TTTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGC 49525 Query 39257 CCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||| ||| || || || || ||||| Sbjct 49524 CCGTCAACGTCTTGACGAAAATCTGCAT 49497 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || |||||||| || || || || || || | || || || | || ||| Sbjct 50269 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGACCATCTTCA 50210 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| |||||||| || || || ||||||||||||| || | || ||| || ||| | Sbjct 50209 AGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGG 50150 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | |||||| |||||| || |||| ||||| | || Sbjct 50149 ATCTTGGCCTTGA-CGTTGTCAATGGTATCGGACGACTCAACCTCCAGAGTGATCGTCTT 50091 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || || || || ||||| Sbjct 50090 GCCGGTCAAGGTCTTGACGAAAATCTGCAT 50061 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || || || || | || || || | || || ||||| Sbjct 49418 TGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGCTGC 49359 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 |||||||| || || |||||||||||||||| || | || ||| |||||| ||| || Sbjct 49358 TTGCCCGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTG 49299 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || || || ||||| || | || || | || || || Sbjct 49298 GCCTTGA-CGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCTGT 49240 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || |||||||| ||||| Sbjct 49239 CAGGGTCTTGACAAAGATCTGCAT 49216 >seq1 Length=721539 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAA 39151 ||| || || ||||| || |||| |||| || || |||| || ||||| ||||| || | Sbjct 158195 CTCCTTCTGGATATTGTAGTCGGACAAG-GTACGACCGTCCTCCAGCTGCTTGCCGGCGA 158253 Query 39152 ATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 | ||||||||||||||||||| || | || ||| |||||| || ||| || | || Sbjct 158254 AGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCA-CG 158312 Query 39212 TCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | | ||| || || || || || | |||||| | || |||||||| || || Sbjct 158313 TTGTCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTG 158372 Query 39271 ACAAAGATTTGCAT 39284 || ||||| ||||| Sbjct 158373 ACGAAGATCTGCAT 158386 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || ||||||||||||| | || || |||| |||||||| ||||| || || Sbjct 157679 CTCCTTCTGGATATTATAATCGGACAACGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAA 157738 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| |||||||| |||| || | | ||| |||||| || ||| || | ||| Sbjct 157739 GATAAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTCA-CGT 157797 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| || ||||| || || | |||||| | || ||||| || || || | Sbjct 157798 TGTCGATCGTGTCAGAGGACTCGACTTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCA 157857 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 157858 CGAAGATCTGCAT 157870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429541872618056