Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq52 107 1e-18 seq1 84.2 1e-11 >seq52 Length=153599 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | ||||| || || ||||| ||||| || || ||| || Sbjct 49497 ATGCAGATTTTCGTCAAGACGTTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCG 49556 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||||| ||||| || || | ||||| || || Sbjct 49557 GACACCATTGACAATGTCAAGGC-CAAAATTCAGGACAAGGAGGGCATCCCGCCCGACCA 49615 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| || || ||||||| |||||| | || ||||| Sbjct 49616 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCGGACTACAA 49675 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 49676 CATCCAGAAGGAG 49688 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || || || || || ||||||||||| || ||||| || | Sbjct 49780 ATGCAGATTTTCGTTAAGACGCTGACCGGCAAGACGATCACTCTGGAGGTTGAGTCGTCT 49839 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || ||| | || || ||||| Sbjct 49840 GACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGTATCCCACCGGATCA 49898 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| || |||| || | || ||| | ||| ||||| Sbjct 49899 GCAGCGCCTCATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACTCTCTCCGACTACAA 49958 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 49959 CATTCAGAAGGAG 49971 >seq1 Length=721539 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || | || || || || ||||| ||||| || || || | Sbjct 158158 ATGCAGATCTTCGTTAAGACATTGACCGGCAAGACCATCACACTCGAGGTCGAGTCATCT 158099 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || || || || ||| | || || ||||| Sbjct 158098 GACACAATCGATAATGTCAAGGCGAAGA-TTCAGGATAAGGAGGGTATCCCCCCTGATCA 158040 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| || ||||| || | ||||| | |||||||| Sbjct 158039 GCAGCGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACACTGTCAGATTACAA 157980 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 157979 CATTCAGAAGGAGTCTAC 157962 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| ||||| |||||||| || || || || || | Sbjct 157414 ATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACGATCACCCTGGAGGTAGAGTCTTCC 157355 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| || || || || | || || |||||| Sbjct 157354 GACACGATTGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCCCCCGATCAA 157295 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || || || |||| | || | ||||||||| Sbjct 157294 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCAGGACGCTGTCGGATTACAAC 157235 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||||| ||| Sbjct 157234 ATCCAGAAGGAGTCTACA 157217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006666921696