Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq70 129 8e-25 >seq70 Length=136885 Score = 129 bits (142), Expect = 8e-25 Identities = 369/566 (65%), Gaps = 10/566 (2%) Strand=Plus/Plus Query 48122 CAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAA 48181 ||| |||| |||| | ||||||||| || || | ||| ||||| | || || | Sbjct 73186 CAAGTGTTGGAACAGCAGACATGCAAAGTCGGTGTGCATACCCTCATCGCGGCTGATGAG 73245 Query 48182 TTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGC 48241 ||||| || || || || |||||||| || ||||| || |||||||| || || | ||| Sbjct 73246 CTCGTTCGAGAACGTCAGGCCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATCGACGC 73305 Query 48242 GAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA 48301 ||| || || || ||||| |||||||| || || || || || ||| | ||| |||| Sbjct 73306 GAACGAGCCGGAGAAGAAAATGCCTTCGACCGCGGCGAACGCAACAAGCCGCTC--CGTA 73363 Query 48302 ACTGGCTTCGTTGTGT-----ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAA 48356 | | | | || ||| ||||| || | ||||| || ||||||||||| | || Sbjct 73364 AACGTCGACTTTTTGTCCGCGATCCAGCGCAGCGCCCAGTCCGCCTTCTTCTTGATGCAC 73423 Query 48357 GGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTA 48416 |||| || || || || | || || | ||| || || | ||| || Sbjct 73424 GGCACGGTCTCGATCGCGTCGAACAGGTGCTCGCGCACATGCGGCTCCTTGATGTAGGTG 73483 Query 48417 TCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAA 48476 || || | || |||| | |||||||| || || || || ||||| || ||||| Sbjct 73484 TCGATGAGGAGCGAATACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 73543 Query 48477 AAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTT 48536 ||||| | ||| || | || ||| ||||| | | || || || | ||||| || Sbjct 73544 AAACACCGCGCCTCGGCGACCTGCACCTCGTTGGAGAACCGCTCGAGGAGGTTCTCGTTG 73603 Query 48537 ACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTG 48596 || || || || || || ||||| || | || || ||||||||| |||||| Sbjct 73604 ACGATCCCGTCCGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATAAAATATCGCTCGTTG 73663 Query 48597 GAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 48653 ||| | || | |||||| || || | | || | || ||||||||| Sbjct 73664 TCGTTCAGCCGGTTCTCCCAGTCCCAGAGGTCGTGACTGAGGTCGATCTCCTCAGCTGTC 73723 Query 48654 CAAAATGATGCCTCTGCTTTTTTATA 48679 || |||||||| || ||||| || || Sbjct 73724 CAGAATGATGCTTCGGCTTTCTTGTA 73749 Score = 100 bits (110), Expect = 4e-16 Identities = 345/537 (64%), Gaps = 6/537 (1%) Strand=Plus/Minus Query 48161 ACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTT 48220 ||| ||||| | || || | ||||| || || || || |||||||| || || || || Sbjct 75813 ACCCTCATCACGGCTGATGAGCTCGTTCGAGAACGTCAGGCCGGGCATGAGACCGCGCTT 75754 Query 48221 TTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAA 48280 |||||||| || || | |||||| || ||||| ||||| || || || || || || || Sbjct 75753 CTTGAGCCAGAAGATCGACGCGAACGAGCCAGAGAAGAAGATACCCTCGACCGCTGCGAA 75694 Query 48281 TGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATC 48337 || |||| | ||| || | || || |||| ||||| || | ||||| || Sbjct 75693 GGCAATAAGACGCTCGGCGAACGAGGATTTCTTGTCCGAGATCCAACGGAGGGCCCAGTC 75634 Query 48338 AGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATT 48397 ||||||||||| | || || || || || || || | ||| || | | | Sbjct 75633 CGCCTTCTTCTTGATGCAGGGGATGGTGTCGATCGCGTCAAACAGGTGCTCACGCTGCGT 75574 Query 48398 GCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAAT 48457 | || || | || || || || | || ||| | |||||||| || || || || Sbjct 75573 GGGGTCCTTGATATAGGTGTCGATGAGGAGCGAGTACGTCTCGGAGTGGATGTTCTCCAT 75514 Query 48458 TGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCG 48517 ||||| || ||||| || || | || || | | |||||| || | | || || Sbjct 75513 CATGATCTGGAAGCCGTAGAAGCACCGTGCCTCAGCAACCTGTACTTCGTTGGAGAACCG 75454 Query 48518 TTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTT 48577 || | | ||||||||| || || || || ||||| ||||| || | || || Sbjct 75453 CTCGACGAGATTCTCATTGACAATGCCGTCGGACGCAGCGAAAAAGGCGAGGACGTGCGA 75394 Query 48578 AATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATAT 48634 || || | |||| | ||| | || | |||||||| | || || |||| Sbjct 75393 GATGAAGTGGCGCTCGTCGTCGTTCAGACGGTTGTGCCAGTCATGCAGGTCCTTGGATAG 75334 Query 48635 ATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || | || || || ||||| || || ||||| || || || ||||| | ||| || Sbjct 75333 GTCCATCTCCTCTGCGGTCCAGAACGACGCCTCAGCCTTCTTGTACATCTGCCAGAT 75277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662617447680