Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 116 9e-21 seq52 105 2e-17 >seq1 Length=721539 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || |||||||| || ||||| || ||||||| || || | || || Sbjct 157659 AGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGACAACGTGCGACCGTCC 157718 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||||||||| | |||||| || | | ||| || ||||| || Sbjct 157719 TCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCC 157778 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | |||| || ||| ||||| || || || || Sbjct 157779 TGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACTTCGAGCGTGATTGTC 157838 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||||||||||||||||| |||||| Sbjct 157839 TTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 157870 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| |||||||| || |||||||||||||| | | || || || || Sbjct 157203 AGAACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGACAGCGTCCTGCCGTCC 157262 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||| || || | | || || ||||| || Sbjct 157263 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCGGGGGGAATGCCCTCCTTATCC 157322 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | |||| ||| |||||| || || || || || Sbjct 157323 TGAATCTTCGCCTTCACGTTGTCAATCGTGTCGGAAGACTCTACCTCCAGGGTGATCGTC 157382 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||||| |||||| Sbjct 157383 TTTCCAGTGAGCGTCTTGACGAAGATCTGCAT 157414 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || |||||||| || ||||| ||||| |||| || || | || || Sbjct 158175 AGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCGTCC 158234 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || |||||||||||||| | ||||||||| | | || || ||||| || Sbjct 158235 TCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 158294 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | |||| || || || || || || || || Sbjct 158295 TGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTC 158354 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| ||||||| |||||| Sbjct 158355 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 158386 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||||||||| || || ||||||||||| | | || | ||||| || | Sbjct 157951 CAAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCA 158010 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||| || || | |||||| || | | ||| || ||||| || |||| Sbjct 158011 GCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAA 158070 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | |||| || ||| || || || || || || |||| Sbjct 158071 TCTTCGCCTTGACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGC 158130 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||||| |||||| Sbjct 158131 CGGTCAATGTCTTAACGAAGATCTGCAT 158158 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||||||||| || || || || ||||||||||| | | ||| | ||| || Sbjct 157431 AGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCGTCC 157490 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||||||||| | ||||| || | | || || ||||| || Sbjct 157491 TCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGGAATACCCTCCTTATCC 157550 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | |||| || ||| || || | || || || Sbjct 157551 TGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACCTCCAACGTGATCGTC 157610 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| | ||||| ||||||| |||||| Sbjct 157611 TTGCCCGTCAACGTCTTTACGAAGATCTGCAT 157642 >seq52 Length=153599 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 |||||||| || ||| || ||||||||||| || | | ||| | || ||||| || Sbjct 49702 AGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGAGC 49643 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 || || || ||||| || | ||||||||| | || ||| || ||||| || |||||| Sbjct 49642 TGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATT 49583 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || |||||| | || | | |||| || ||| || || || || || || |||||| Sbjct 49582 TTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCC 49523 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || | ||||| ||||| | |||||| Sbjct 49522 GTCAACGTCTTGACGAAAATCTGCAT 49497 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||| || ||| || ||||||||||| || | | || | |||||| Sbjct 50272 AGGACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGACCATCT 50213 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | || ||| || ||||| || Sbjct 50212 TCAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCC 50153 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | | || || ||| || || ||||| || || Sbjct 50152 TGGATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTCAACCTCCAGAGTGATCGTC 50093 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||| | |||||| Sbjct 50092 TTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 50061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153810274269752