Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 170 4e-37 seq52 167 5e-36 seq70 127 4e-24 seq116 105 1e-17 seq109 95.1 3e-14 seq35 84.2 5e-11 >seq1 Length=721539 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || || ||||| | || ||| || || |||||||| |||| | Sbjct 157416 CCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGAA 157475 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || || ||||| | |||||| || ||| ||| Sbjct 157476 AGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGGA 157535 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || ||||| || || ||| | ||||| ||||| || | ||||| Sbjct 157536 ATACCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACC 157595 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 157596 TCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTGCAT 157642 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 || ||||| || ||||| || || || | || || || ||||| |||||||| | | Sbjct 158160 CCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAC 158219 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || ||||| || || || ||||| ||||| | ||| || ||||| || Sbjct 158220 AAG-GTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 158278 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| || || ||| | ||||| ||||| || | |||||| Sbjct 158279 AATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGATTCGAC 158338 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 158339 CTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 158386 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || |||||||| || | || ||||| |||||||| || || || || || || Sbjct 157968 TCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAA 158027 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || || ||| || ||||||||||| || || ||||| || || || || Sbjct 158028 ATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCGCCTTGACATTA 158087 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | ||||| ||||| ||||| ||||| || ||||| ||||||||| Sbjct 158088 TCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGCCGGTCAATGTCTTAACG 158147 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 158148 AAGATCTGCAT 158158 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || || || | || || || ||||||||||| || | Sbjct 157188 CCACCACGGAGACGAAGAACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGAC 157247 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | ||| ||||| || || || || || ||||||| || ||||| || ||| Sbjct 157248 AGCGTCCTGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCGGGGGGA 157307 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| || || ||| | || || ||||| |||| || || Sbjct 157308 ATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATCGTGTCGGAAGACTCTACC 157367 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || || | ||||| ||||| |||||||| Sbjct 157368 TCCAGGGTGATCGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCAT 157414 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || || || | || || || ||||| || || || | Sbjct 157644 CCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGAC 157703 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||| || ||||| || || || || || ||||| | || || || || || Sbjct 157704 AACGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGGG 157763 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| || ||||| || || ||| | ||||| ||||| || | |||||| Sbjct 157764 ATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACT 157823 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||| | |||||| ||||| |||||||| Sbjct 157824 TCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 157870 Score = 107 bits (118), Expect = 4e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| || ||||| || |||||| | ||||||||||| |||| ||||| ||| Sbjct 158566 CCCTCCTTGTCCTGAATCTTCGCCTTTACGTTGTCGATAGTGTCGGAAGACTCGACCTCG 158625 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || || | ||||||||| || |||||||| Sbjct 158626 AGCGTGATGGTCTTCCCGGTGAGAGTCTTAACAAAGATCTGCAT 158669 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| |||||||| || || || | || || || |||||||||||||| | Sbjct 158388 CCTCCACGAAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 158447 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||||||||| || || || ||||| || ||||||| ||| || ||||| ||| Sbjct 158448 AACGTGCGGCCATCTTCCAGCTGCTTCCCCGCGAAGATCAGACGCTGCTGGTCGGGAGGA 158507 Query 282993 ATAC 282996 |||| Sbjct 158508 ATAC 158511 >seq52 Length=153599 Score = 167 bits (184), Expect = 5e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 ||||| || || || ||||||||||||| || |||||||||||||| || || || || Sbjct 49412 GTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCC 49353 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 || ||||| | ||| || ||||| ||| || ||||||||||| |||||||| || || Sbjct 49352 GCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 49293 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 ||| | || ||||||||||| | ||| || ||||| || |||||||| || |||| ||| Sbjct 49292 ACGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCTTCCCTGTCAGGGTC 49233 Query 283083 TTAACGAATATCTGCAT 283099 || || || |||||||| Sbjct 49232 TTGACAAAGATCTGCAT 49216 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| ||||| |||| || | ||||| || || |||||||||||||| | Sbjct 50287 CCGCCACGCAGACGAAGGACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGAG 50228 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| ||||| || || || || || || ||||| | || || ||||| ||| Sbjct 50227 AGCGTGCGACCATCTTCAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 50168 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || |||||||| || || ||| | || || || || || | || || Sbjct 50167 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTCAACC 50108 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 50107 TCCAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 50061 Score = 163 bits (180), Expect = 6e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 282892 CCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTA 282951 ||||||| | ||||| || || |||||||||||||| | ||| |||||||| || || | Sbjct 49704 CCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGA 49645 Query 282952 GTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGA 283011 | || || || |||||||||| || || ||||| ||| || ||||||||||| || | Sbjct 49644 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAA 49585 Query 283012 TCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTAC 283071 | || || || || | || || |||||||| | || || ||||| ||||| ||||| | Sbjct 49584 TTTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGC 49525 Query 283072 CCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||| ||||| ||||| |||||||| Sbjct 49524 CCGTCAACGTCTTGACGAAAATCTGCAT 49497 Score = 149 bits (164), Expect = 1e-30 Identities = 161/212 (76%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 282889 GTACCA-GATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 |||||| | || | ||||| || || || ||||||||||| | || || ||||||||| Sbjct 49991 GTACCAAGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCC 49932 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || | || || || |||||||| | || || || || || |||||||||||||| Sbjct 49931 TCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCC 49872 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 |||||||| || || || | ||||| ||||| || | || || || |||||||||||| Sbjct 49871 TGGATCTTGGCCTTGACATTGTCGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTC 49812 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || |||| ||||||||||| |||||||| Sbjct 49811 TTGCCGGTCAGCGTCTTAACGAAAATCTGCAT 49780 >seq70 Length=136885 Score = 127 bits (140), Expect = 4e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || |||||||||||||| | |||||| | || || ||||| ||||| || ||||| | Sbjct 75999 CTCATCGGCATGAATGCGAAGCTCATGTGCCAGTACATCGAGTTCGTCGCAGATCGCCTG 76058 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | || ||||| || || ||| ||||| ||| | | ||||||||||| || ||||| Sbjct 76059 CTTGTCGCGCTTGGCGACCCGAAGGTGTACAACGCGACGAACCCCTTCGACTTCATGGAC 76118 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTC 230387 ||||| || |||||||| || || ||||||||||| ||||| ||| Sbjct 76119 CTCATCTCGCTCCAGGGTAAGACAAACTTCTTCGAGAAGCGAGTC 76163 Score = 100 bits (110), Expect = 6e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| || || ||| | || || ||||| ||||| || || || | Sbjct 73036 CTCATCGGCATGAACGCCCCGCTGATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTC 72977 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | || |||| ||| |||| || || ||| ||| |||||| |||| || ||||| Sbjct 72976 CTGGTCTCGCTCGGGAACGAAAAGCACTACAACGCCACGAACCCATTCGACTTCATGGAC 72917 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA 230395 || |||||||| ||||| || || || |||||||| ||||| ||| |||||| Sbjct 72916 CTGATTTCACTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGTCTCCGATTA 72864 >seq116 Length=96108 Score = 105 bits (116), Expect = 1e-17 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | ||||| ||||| |||| || || ||| Sbjct 9945 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCG 10004 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || ||||||||||| ||||| | ||||| ||||| |||||||| ||| Sbjct 10005 AGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTC 10052 >seq109 Length=99073 Score = 95.1 bits (104), Expect = 3e-14 Identities = 181/262 (69%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 273718 GGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTT 273777 |||| |||| ||| | |||||| | | |||||| || ||||| || ||| Sbjct 40185 GGTAATTCATCAAGGGATCATCGGCCGGATGGAAAACTTTCCGCGTAATCGGGGCGGGTT 40126 Query 273778 TCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGA--ACCAAA 273835 ||||||||| |||||||| |||||||||||||||||| || | | ||| ||| || Sbjct 40125 CCGTGAAAATATACCTGGCCGACGCATGGTCCTTGCCACCCTG--GTCACGAGTACCGAA 40068 Query 273836 CTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 |||||| | |||| || ||| || |||||||| |||| | | ||||| || | || Sbjct 40067 CTGACCATTCGGCATAAGGATGTTCATATTGTTGCTTCCGATGAAGTCCTGGGCGAGGTT 40008 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATA-GGCGCTGTGTTCGGCGATAT 273954 ||||||||| | | || || |||||||| || | || |||||| | || | Sbjct 40007 GACGATAGTCTGCATCAAACTCACTTCTCCGTGGTGGTATTGAGC-GTGTTCAGAGACGT 39949 Query 273955 AACCACTGAACTGAGCAACCTT 273976 |||| || ||| || ||||| Sbjct 39948 AACCGACGAGCTGCGCGACCTT 39927 >seq35 Length=182428 Score = 84.2 bits (92), Expect = 5e-11 Identities = 199/301 (66%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 43984 CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACT 44043 || || ||||| |||||| ||||||| ||||| |||| || || | || | ||| Sbjct 135646 CAGGCATCGACGTCGGAGCTGTACGGCAAGGTCGTCGAGACGCCGCAGAGCGAGACGACG 135705 Query 44044 CCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAA 44103 ||||| || || || || || ||||| |||||||| ||||| | |||||| Sbjct 135706 CCGTTCTACCCGCGCTCGCCGTACGGTGTCGCGAAGCTGTATGCGTTTTGGATCACGGTC 135765 Query 44104 AATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGT 44163 || || |||||| |||||||||||| || || || || ||||| ||||| || Sbjct 135766 AACTACCGCGAGGCGTATGGGATGTACGCGTGCAACGGCATCCTGTTCAACCACGAGAGC 135825 Query 44164 CCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATATTTTC 44223 ||| | || | |||||| || || || ||| || || | || | |||| Sbjct 135826 CCCCGGCGTGGGCGCACGTTCGTCACCCGCAAGATCTCGCGCGCCGCGGCAGACATTTCG 135885 Query 44224 AACGGGACAGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATAT 44283 ||||| || ||| ||||||| |||||| | || | | | ||||||||| || Sbjct 135886 CTCGGGAAGCAATCGTGCCTGTATCTGGGAAACCTCGATGCGCAGCGTGATTGGGGACAT 135945 Query 44284 G 44284 | Sbjct 135946 G 135946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046729651121648