Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq52 134 1e-26 seq55 84.2 2e-11 >seq1 Length=721539 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || || || ||||| || ||||| || ||||||||||| Sbjct 157412 CATGCCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATC 157471 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| |||| ||||||||||| || || ||||| | ||| |||||||| | Sbjct 157472 AGAAAGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGG 157531 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||| ||||| ||| |||||| ||||| | | || ||||| | ||| || Sbjct 157532 AGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTC 157591 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| ||| |||||||| ||||| | ||||| |||||||| |||||| Sbjct 157592 GACCTCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTGCATG 157643 Score = 140 bits (154), Expect = 2e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || ||||| || || |||||| ||||| ||||| |||| | || | || |||| || Sbjct 158178 ACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTA-CGACCGTCCTC 158236 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||| | ||||||||| || | ||| | || ||||| ||| Sbjct 158237 CAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTG 158296 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||||| | | || ||||| | |||||| ||||| | ||| || ||||| Sbjct 158297 AATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGATTCGACCTCGAGCGTGATGGTCTT 158356 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| |||||||| |||||||| |||||| Sbjct 158357 GCCCGTCAGGGTCTTGACGAAGATCTGCATG 158387 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| |||||||||||||| | || | |||| || Sbjct 157206 ACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGACAGCGTCCTGCCGTCCTCA 157265 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| ||||| ||||| | || | || ||||| ||| Sbjct 157266 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCGGGGGGAATGCCCTCCTTATCCTGA 157325 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | || ||||||| || || ||||||| || ||||||||| Sbjct 157326 ATCTTCGCCTTCACGTTGTCAATCGTGTCGGAAGACTCTACCTCCAGGGTGATCGTCTTT 157385 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| ||||| |||||||| |||||| Sbjct 157386 CCAGTGAGCGTCTTGACGAAGATCTGCATG 157415 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||| || ||||||| | ||| |||| || Sbjct 157662 ACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGACAACGTGCGACCGTCCTCA 157721 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||||| | ||| | ||| ||||| ||| Sbjct 157722 AGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGA 157781 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | || ||||| | ||| || || || | ||| || ||||| Sbjct 157782 ATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGACTTCGAGCGTGATTGTCTTC 157841 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| |||||||||||||| ||||| Sbjct 157842 CCCGTGAGAGTCTTCACGAAGATCTGCAT 157870 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 ||||| || || |||||| || ||||||||||| | ||| ||| | || |||||| Sbjct 157953 AGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCAGC 158012 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| || || || || | |||||||||||| | || | ||| ||||| ||| ||| Sbjct 158013 TGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATC 158072 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 ||| ||| | | | || ||||| | || || ||||| | || || ||||| || Sbjct 158073 TTCGCCTTGACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGCCG 158132 Query 44312 GTGAGGGTCTTCACGAAGATTTGCATG 44338 || | ||||| |||||||| |||||| Sbjct 158133 GTCAATGTCTTAACGAAGATCTGCATG 158159 >seq52 Length=153599 Score = 134 bits (148), Expect = 1e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 44128 CACC-AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186 |||| |||||||| ||||||||||| || |||||||| || | || ||| | || | Sbjct 49426 CACCGAGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCT 49367 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | |||||||| || || ||||| | ||||||||| || | || | || ||||| ||| Sbjct 49366 CGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCT 49307 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | | |||| ||||| | |||||||||||| | |||||||||| Sbjct 49306 GGATCTTGGCCTTGACGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTCT 49247 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||||||| || ||||| ||||| Sbjct 49246 TCCCTGTCAGGGTCTTGACAAAGATCTGCAT 49216 Score = 132 bits (146), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 |||||||| ||||||||||| || |||||||| |||| ||| || | || |||| | Sbjct 49985 AGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCCAAC 49926 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| || |||||||| | ||||||||||| | || | ||| ||||| ||| ||| Sbjct 49925 TGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATC 49866 Query 44252 TTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309 || ||| || ||| | |||||||| | || || ||||||| || |||||||| | Sbjct 49865 TTGGCCTTGACATTGT--CGATGGTGTCAGACGACTCAACCTCCAGAGTGATCGTCTTGC 49808 Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || ||||| ||||| || |||||| Sbjct 49807 CGGTCAGCGTCTTAACGAAAATCTGCATG 49779 Score = 125 bits (138), Expect = 5e-24 Identities = 155/210 (74%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 44130 CCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCA 44189 |||| ||||| ||||||||||| ||||||||||| || | || ||| |||| || | Sbjct 49704 CCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGA 49645 Query 44190 GCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTA 44249 ||||||| || |||||||||| |||||||| || | || | || ||||| ||| | Sbjct 49644 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAA 49585 Query 44250 TCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 | || ||| || ||| | |||||||| | ||| |||||||| | || || ||||| Sbjct 49584 TTTTGGCCTTGACATTGT--CAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTT 49527 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||||| ||||| || ||||| Sbjct 49526 GCCCGTCAACGTCTTGACGAAAATCTGCAT 49497 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||||||||||| ||||||||||| || | ||| ||| | || || Sbjct 50269 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGACCATCTTCA 50210 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | |||||||| || | || | || ||||| ||| Sbjct 50209 AGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGG 50150 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| |||| || || ||||||| || |||||||| Sbjct 50149 ATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTCAACCTCCAGAGTGATCGTCTTG 50090 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | |||||| ||||| || |||||| Sbjct 50089 CCGGTCAAGGTCTTGACGAAAATCTGCATG 50060 >seq55 Length=147043 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| |||||||| ||| |||||| ||||||||||| ||| ||| ||| |||| || Sbjct 26075 CACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCGTCCTC 26016 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||||| || || ||||||| ||||||||||| Sbjct 26015 GAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATC 25980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359987276183304