Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 147 5e-30 seq52 136 1e-26 seq116 93.3 1e-13 >seq1 Length=721539 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| |||||||| || || || ||||| ||||| || || ||| ||| Sbjct 157867 CAGATCTTCGTGAAGACTCTCACGGGGAAGACAATCACGCTCGAAGTCGAGTCCTCTGAC 157808 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || |||||||| || ||||| Sbjct 157807 ACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGATCAGCAG 157748 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| || || || | || | |||||||||| || Sbjct 157747 CGCCTTATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGTTGTCCGATTATAATATC 157688 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 157687 CAGAAGGAGTCTACCCTGCACCTCGT 157662 Score = 141 bits (156), Expect = 2e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| |||||||| ||| ||| ||| Sbjct 158383 CAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCTGAC 158324 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || || ||||| |||||||| Sbjct 158323 ACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAG 158264 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || |||||||||||||| || ||||| || || || | || |||| |||| || || | Sbjct 158263 CGTCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTAC-CTTGTCCGACTACAATAT 158205 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || || || || ||||| || || Sbjct 158204 CCAGAAGGAGTCTACCCTGCACCTCGT 158178 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| ||||||||||| ||||| || || ||| Sbjct 157411 CAGATCTTCGTCAAGACGCTCACTGGAAAGACGATCACCCTGGAGGTAGAGTCTTCCGAC 157352 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||||||||| || || || || || || || || || Sbjct 157351 ACGATTGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCCCCCGATCAACAG 157292 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || ||||| || | ||||| ||| || Sbjct 157291 CGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCAGGACGCTGTCGGATTACAACATC 157232 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || ||||| || |||||| Sbjct 157231 CAGAAGGAGTCTACACTTCACCTTGTT 157205 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || |||||||| | ||||| || ||| ||| Sbjct 157639 CAGATCTTCGTAAAGACGTTGACGGGCAAGACGATCACGTTGGAGGTCGAGTCCTCTGAC 157580 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||| || || || || ||||| || |||||| Sbjct 157579 ACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAGCAA 157520 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| || || || | |||||| | ||||| ||| | Sbjct 157519 CGTCTTATCTTCGCTGGCAAGCAGCTGGAGGACGGGCGCACTCTTTCTGATTACAACATT 157460 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 157459 CAGAAGGAATCGACTCTTCATCTCGT 157434 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||| |||||||| || || ||| Sbjct 158155 CAGATCTTCGTTAAGACATTGACCGGCAAGACCATCACACTCGAGGTCGAGTCATCTGAC 158096 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||||||||| || || || ||||| || || ||||| Sbjct 158095 ACAATCGATAATGTCAAGGCGAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAGCAG 158036 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| || ||||| | || || | ||||| ||| | Sbjct 158035 CGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACACTGTCAGATTACAACATT 157976 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 157975 CAGAAGGAGTCTACTCTGCACCTTG 157951 >seq52 Length=153599 Score = 136 bits (150), Expect = 1e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || ||||| || ||||| ||||||||||||||| ||| ||| Sbjct 49219 CAGATCTTTGTCAAGACCCTGACAGGGAAGACGATTACCCTCGAGGTGGAATCCTCGGAC 49278 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 49279 ACTATAGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 49338 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| | ||||| | || || ||| | Sbjct 49339 CGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCTGACTACAACATT 49398 Query 178104 CAAAAAGA 178111 || || || Sbjct 49399 CAGAAGGA 49406 Score = 136 bits (150), Expect = 1e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || || || || ||||||||||||||||| ||| ||| Sbjct 49500 CAGATTTTCGTCAAGACGTTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCGGAC 49559 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || ||||||||||| || || ||||| || |||||||| Sbjct 49560 ACCATTGACAATGTCAAGGCCAAAATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 49619 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||||||||| || | |||||| | || || ||| || Sbjct 49620 CGCCTGATCTTTGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCGGACTACAACATC 49679 Query 178104 CAAAAAGA 178111 || || || Sbjct 49680 CAGAAGGA 49687 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || |||||||| || ||||| || || ||| Sbjct 49783 CAGATTTTCGTTAAGACGCTGACCGGCAAGACGATCACTCTGGAGGTTGAGTCGTCTGAC 49842 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| ||||| ||||| Sbjct 49843 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCGGATCAGCAG 49902 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | || ||||| | ||||| |||| || ||| | Sbjct 49903 CGCCTCATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACTCTCTCCGACTACAACATT 49962 Query 178104 CAAAAAGA 178111 || || || Sbjct 49963 CAGAAGGA 49970 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || ||||||||||||||||| ||| ||| Sbjct 48872 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCCTCTGAC 48931 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| ||||| |||||||| ||||| Sbjct 48932 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGG 48972 >seq116 Length=96108 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || |||||||||||||||||||| || ||| Sbjct 10045 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCCGAC 9986 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| ||||| |||||||| || || Sbjct 9985 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGG 9945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720218962128