Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Obba_20rivulosa_20[genbank_20GCA_5F001687445.1_202016-07-21] 712 sequences; 34,037,596 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq52 163 3e-35 seq1 147 2e-30 seq116 104 2e-17 seq55 102 8e-17 >seq52 Length=153599 Score = 163 bits (180), Expect = 3e-35 Identities = 163/209 (78%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714 ||||||| || |||||||||||||| ||||| ||||| || || ||||| |||| |||| Sbjct 49704 CCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCTTCGA 49645 Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGA 41774 |||||||||| || || ||||||||||| ||||| | || | || |||||||||| ||| Sbjct 49644 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGA 49586 Query 41775 TTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 |||| || | || | | | ||||| ||||||||||| | || || || || Sbjct 49585 ATTTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTG 49526 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| |||||| |||||||||||||| Sbjct 49525 CCCGTCAACGTCTTGACGAAAATCTGCAT 49497 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | |||| || || |||||||||||||| ||||| ||||| || Sbjct 50288 GCCGCCACGCAGACGAAGGACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCTGA 50229 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||| ||||| || |||||||| ||||| | || Sbjct 50228 GAGCGTGCGACCATCTTCAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 50169 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||| ||| || | || || | ||| | | | || ||| |||||| | Sbjct 50168 GATGCCCTCCTTATCC-TGGATCTTGGCCTTGACGTTGTCAATGGTATCGGACGACTCAA 50110 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || ||||| || || |||| ||||| ||||||||||||||| Sbjct 50109 CCTCCAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCATG 50060 Score = 147 bits (162), Expect = 2e-30 Identities = 169/223 (76%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 41643 GTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGC 41702 |||| |||| || || || || |||||||||||||||||||| ||||||||||| || | Sbjct 49996 GTAG-CGTACCA--AGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTAC 49940 Query 41703 GCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCT 41762 | | || || | ||||||||| || || || |||||||| || |||| || | | || Sbjct 49939 GGCCATCCTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGTGGGATACCCT 49880 Query 41763 CCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCAC 41820 |||||||| ||| || ||| || | || | ||||| |||||| ||||||| Sbjct 49879 CCTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCAGACGACTCAACCTCCAG 49822 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| || || ||||||||||| ||||||||||||||| Sbjct 49821 AGTGATCGTCTTGCCGGTCAGCGTCTTAACGAAAATCTGCATG 49779 Score = 138 bits (152), Expect = 1e-27 Identities = 160/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| || || || |||||||||||||||||||| ||||| || || ||||| | || | Sbjct 49426 CACCGAGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCT 49367 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||| ||||| || || ||||| ||||| | || | || |||||||||| Sbjct 49366 CGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC- 49308 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 || | || || | ||| | | | |||||| || |||||||| | || ||||| Sbjct 49307 TGGATCTTGGCCTTGACGTTGTCTATAGTGTCCGAGGATTCCACCTCGAGGGTAATCGTC 49248 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| ||||| || || |||||||| Sbjct 49247 TTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 49216 Score = 105 bits (116), Expect = 6e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||| || |||||||||||||| ||||| |||||||| |||||||| |||| |||||| Sbjct 49140 AGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGC 49081 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 || || || ||||| || |||||||| ||||| | || | ||| ||| Sbjct 49080 TGTTTACCAGCGAAAATGAGGCGCTGCTGGTCAGGTGGGATGCTGTCC 49033 >seq1 Length=721539 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || ||||| || ||||||||| || || |||||||| Sbjct 158159 GCCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGA 158218 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||| || |||| || ||||||||||||||||| || || ||||| ||||| | || Sbjct 158219 CAAGGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 158278 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| ||| | || || | ||| | | | ||||| || || | Sbjct 158279 AATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGATTCGA 158337 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| || || || |||||||| ||||| ||||| ||||||||| Sbjct 158338 CCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 158387 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || || ||||||||| ||||| || || || Sbjct 157187 GCCACCACGGAGACGAAGAACAAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAATCCGA 157246 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || | |||| || ||||||||||| ||||| |||||||||||||| || | ||| Sbjct 157247 CAGCGTCCTGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCGGGGGG 157306 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||| ||| ||| | || || | ||| | | | |||||| ||||| | Sbjct 157307 AATGCCCTCCTTATCC-TGAATCTTCGCCTTCACGTTGTCAATCGTGTCGGAAGACTCTA 157365 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || ||||| || || || |||||||| ||||| ||||||||| Sbjct 157366 CCTCCAGGGTGATCGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCATG 157415 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || || |||||||||||||| || || || Sbjct 157415 GCCTCCACGCAGACGCAGGACGAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGA 157474 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || |||||| |||| || ||||||||||| ||||| || || || || || || | || Sbjct 157475 AAGAGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGG 157534 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||| ||| ||| | || || | ||| | | | ||||| ||||| | Sbjct 157535 AATACCCTCCTTATCC-TGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGA 157593 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| ||| ||||| || ||||||| |||||||||||| ||||||||| Sbjct 157594 CCTCCAACGTGATCGTCTTGCCCGTCAACGTCTTTACGAAGATCTGCATG 157643 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || ||||| || ||||||||| || ||||| ||||| Sbjct 157643 GCCGCCACGGAGACGAAGGACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGA 157702 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| |||| || ||||||||||| ||||| || |||||||| || || | || Sbjct 157703 CAACGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCGGGAGG 157762 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || || | ||| | | | ||||| ||||| | Sbjct 157763 GATACCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAGGACTCGA 157821 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | ||| || || || ||||| || ||||| ||||| |||||||| Sbjct 157822 CTTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 157870 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || ||||| || ||||||||||||||| || || || || ||||| | || || ||| Sbjct 157953 AGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCTGACAGTGTGCGACCATCCTCCAGC 158012 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||| ||||| || || ||||| || || | ||| | | |||||| ||| ||| | Sbjct 158013 TGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCC-TGAAT 158071 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || || | || | | ||||| ||||| ||||| | || || || || || Sbjct 158072 CTTCGCCTTGACATTATCGATTGTGTCAGATGACTCGACCTCGAGTGTGATGGTCTTGCC 158131 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||||| ||||| ||||||||| Sbjct 158132 GGTCAATGTCTTAACGAAGATCTGCATG 158159 >seq116 Length=96108 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| ||||||||| ||||| |||||| |||||||| | || ||| Sbjct 9776 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 9835 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCT 41760 ||||||||||||||||| || |||||||| ||||||| ||| | ||| Sbjct 9836 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCT 9882 >seq55 Length=147043 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || || || ||| ||||||||| ||||| |||||| | Sbjct 26092 CCACCACGAAGGCGGAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 26033 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| ||||| ||||||||||| || || | |||| Sbjct 26032 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCGGGGGGA 25973 Query 41756 A 41756 | Sbjct 25972 A 25972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299885494400