Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peniophora_20sp._20CONT_20[genbank_20GCA_5F001632445.1_202016-04-28] 1,092 sequences; 46,030,792 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq86 96.9 3e-15 seq378 84.2 2e-11 seq202 84.2 2e-11 >seq86 Length=145559 Score = 96.9 bits (106), Expect = 3e-15 Identities = 172/251 (69%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 11620 AAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGA 11679 ||||| |||||| || || || ||| | |||||||| | | || |||||||| || Sbjct 4150 AAACAGTAAACAGGCGAAGTCGGTATGCATGCCTTCGTCGCGAGAAATGAGTTCATTTGA 4091 Query 11680 AAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACC 11739 || || | ||||||||||| || ||||| || | |||||| || | || || || || Sbjct 4090 GAAAGTAAGGCCGGGCATCAAGCCGCGTTTCTTGAGCCAAAAGATGGACGCGAACGAGCC 4031 Query 11740 AGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC------ATATAC 11793 || ||||| || || || ||||| ||||| || |||| | ||| | || | Sbjct 4030 GGAGAAGAAGATGCCTTCGACAGCAGCAAAAGCGACTAGGCGTTCAGCGAACGTCGATTC 3971 Query 11794 CTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGT 11853 ||||| | |||||||| ||||| || |||||||| || || ||| || || Sbjct 3970 CTTGTCG---GATATCCAGCGCAGTGCCCAGTCCGCTTTCTTCTTCACACATGGGATCGT 3914 Query 11854 TTCTATAGCGT 11864 ||||| |||| Sbjct 3913 GTCTATCGCGT 3903 >seq378 Length=27749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 ||| || ||||| |||||||| | |||||||| | || | || || | ||| ||||| Sbjct 7336 TATGAGCTCATTCGAAAATGTGAGGCCGGGCATTAGGCCCCTCTTCTTGAGCCAGAATAT 7277 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTC 11780 ||| || || || || ||||||||||| |||||||| || || || || |||| || Sbjct 7276 AGCTGCGAAGGATCCTGAAAAGAATATACCCTCCACTGCCGCGAAAGCCACTAATC 7221 >seq202 Length=72248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 ||||| || ||| || | |||||||||| || || ||||| || || || || | Sbjct 46225 CACGCGAACTCAGTGTGCATTCCTTCGTCTCGACAAATGAGTTCGTTGGAGAAAGTGAGG 46166 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 |||||||| | || | |||||| | ||| || || || || || || || || || || Sbjct 46165 CCGGGCATGAGACCCCTTTTTTTGAGCCAGAAGATTGCTGCGAACGAGCCCGAGAAAAAG 46106 Query 11750 ATTCCCTCCACAGCTGCAAATGCTAC 11775 ||||||||||| || ||||| ||||| Sbjct 46105 ATTCCCTCCACTGCGGCAAACGCTAC 46080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468518404636480