Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peniophora_20sp._20CONT_20[genbank_20GCA_5F001632445.1_202016-04-28] 1,092 sequences; 46,030,792 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq379 104 2e-17 seq13 102 8e-17 seq220 89.7 5e-13 >seq379 Length=45813 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || |||||||| ||| | |||| || |||||||| || ||| Sbjct 39390 GTAGACTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCATCCTCGAGCTGCTTGCCA 39449 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| |||||||| ||||| || ||||| ||| || || Sbjct 39450 GCGAAGATAAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 39509 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| || ||| ||||||| ||| | ||||||||||| | || Sbjct 39510 ACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 39569 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 39570 TTGACGAAAATCTGCAT 39586 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139536 GGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGC 139595 |||| || || | ||| | || | ||| | ||| ||| || |||||||| || || Sbjct 38517 GGCCACCGCGGAGACGAAGGACGAGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCAG 38576 Query 139596 TCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | |||| | ||| || ||||| || || || ||||||| || ||||| || || | Sbjct 38577 AAAGAGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCG 38636 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | ||||| || ||||| ||| || || | | || | ||||| | || ||| | Sbjct 38637 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAA 38696 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | |||||||||||||| || || ||||| || |||||| Sbjct 38697 CCTCGAGCGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATA 38746 >seq13 Length=301256 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139536 GGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGC 139595 |||| || || || || | || | ||| | || ||||| || |||||||| ||||| Sbjct 244841 GGCCACCACGCAAGCGGAGGACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCCG 244900 Query 139596 TCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | |||| || || ||||| || || || |||||||||| ||||| ||||| | Sbjct 244901 AGAGAGTGCGACCATCCTCAAGCTGCTTCCCCGCGAAGATCAGACGCTGCTGGTCGGGCG 244960 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCC 139714 | || || || ||||| ||| | || | || | | || | |||||| | | ||| Sbjct 244961 GGATTCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTGTCAATTGTGTCCGATGACTCG 245019 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||||||||||||| || || ||||| |||||||| Sbjct 245020 ACCTCCAAGGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 245069 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| |||||| | || | ||| |||||||| || ||| Sbjct 245384 GTAGACTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCA 245443 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || || || ||||| || ||||| ||| || || Sbjct 245444 GCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 245503 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||| ||||| | || | ||||||||||| | ||| Sbjct 245504 ACATTGTCGATAGTGTCAGACGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGCGTC 245563 Query 139748 TTTACGAATATTTGCAT 139764 || |||||||| ||||| Sbjct 245564 TTCACGAATATCTGCAT 245580 >seq220 Length=67240 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| ||||| || || | ||| |||||||| Sbjct 23358 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGCGTACGGCCGTCCTCGAGCTG 23417 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || |||| || || ||||| |||||||| || || || ||||| ||| || Sbjct 23418 CTTGCCCGCGAAGATAAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTT 23477 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | |||||| ||| ||| ||||| | ||| | ||||||||||| Sbjct 23478 GGCCTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 23537 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 23538 AAGGGTCTTCACGAAGATCTGCAT 23561 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || || ||||| ||||| | |||| | || |||||||| || || || | Sbjct 22516 CTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGCCCATCCTCGAGCTGCTTGCCGGCGAA 22575 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||||| || ||||| || || || ||||| || ||||| ||| || || | | Sbjct 22576 GATCAAGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 22635 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||||| | ||||||||| | || | ||||||||||||||||| || || Sbjct 22636 GTCGATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTGCCGGTCAACGTCTTGAC 22695 Query 139753 GAATATTTGCAT 139764 ||| || ||||| Sbjct 22696 GAAGATCTGCAT 22707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496057228726400